Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06510 749 / 0 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) AT3G60130 113 / 1e-26 BGLU16 beta glucosidase 16 (.1.2.3) AT3G60120 113 / 2e-26 BGLU27 beta glucosidase 27 (.1) AT5G36890 112 / 3e-26 BGLU42 beta glucosidase 42 (.1.2) AT1G26560 112 / 5e-26 BGLU40 beta glucosidase 40 (.1) AT2G25630 111 / 8e-26 BGLU14 beta glucosidase 14 (.1) AT5G44640 108 / 7e-25 BGLU13 beta glucosidase 13 (.1) AT3G60140 107 / 3e-24 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G42260 107 / 3e-24 BGLU12 beta glucosidase 12 (.1) AT2G44490 107 / 4e-24 BGLU26, PEN2 PENETRATION 2, BETA GLUCOSIDASE 26, Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011147 [exp] 1135 / 0 AT3G06510 826 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10006100 [exp] 117 / 2e-31 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10010837 [exp] 117 / 2e-31 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10030186 [exp] 117 / 2e-31 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10022976 [exp] 117 / 2e-31 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10024065 [exp] 111 / 1e-25 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1) Lus10031234 [exp] 110 / 2e-25 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10004654 [exp] 109 / 4e-25 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10031808 [exp] 109 / 4e-25 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149500 [exp] 941 / 0 AT3G06510 832 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Potri.004G040700 [exp] 117 / 1e-27 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.004G019366 [exp] 107 / 2e-24 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.010G178800 [exp] 107 / 2e-24 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.008G094200 [exp] 106 / 3e-24 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.T085301 [exp] 102 / 1e-22 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 102 / 1e-22 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G227300 [exp] 101 / 2e-22 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G403900 [exp] 101 / 2e-22 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.004G019800 [exp] 100 / 3e-22 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10043048 pacid=23167909 polypeptide=Lus10043048 locus=Lus10043048.g ID=Lus10043048.BGIv1.0 annot-version=v1.0 ATGGCGTTCTTGACTCTCGTCGTATCGGCCACCAAGGTCGCCGGCGTCTTAGTAAGCCTCACCGTCGCTTCCAACGCCATCTCTTTCTGGCGTTTCCAGA AGAAGAATCTCAAGTCTTTCGAACCCGGTATTGACGAGACCTCAGAGGTTCTGGCGGCTTTTAATGTCGACGGAGGAGAAAGTGAGTTTTTCTTTGGTTT GGCAACCGCACCTGCTCACGTTGAGGACAGGCTTAACGATGCTTGGCTCCAGTTTGCCGAAGAGACTCCAGCTGGCGTATCACTTCCACAGGGAGACCTG CAACCTGCTGATGCTGTTCTTGTTTCAGCTGGAGAGGAAGGGGGGTCTCAACAAGCTTCTGTTTCTCCAAAAGAGCTTGCTAAGGTTGTTAAAAGGAAGA AGTCAATTAAAGTTTCTATGGAAGCTATGATTAGAGGGTTTGAGAAGTACACAGAAGAAGAAGAAGAAGAAGTGCCTTTGCCAAGTGAAGAATTCCATCA CAATGTAGCAGCATGGCACAATGTTCCTCACCCAATGGGAATAGATTGGACTCGAATTATGCCAGATGAGCCTGTCAACGGTCTTAAAGATGCTGTTAAT TTTGCAGCACTGGAGCGGTACAAGTGGATAATTTCAAGGGTCCATTCCTATGGAATGAAGGTGATGTTGACTCTTTTCCACCATTCGTTGCCACCTTGGG CTGGTGAGTATGGTGGATGGAAGCTGGAAAAGACTGTTGATTATTTTATGGACTTCACCAGGCTTGTTGTCGATGCCGTATCAGAGCTAGTAGACTACTG GATTACATTTAACGAGCCTCATATTTTCTGTATGCTAACCTATTGCGCTGGTGCATGGCCTGGTGGTCACCCTGATATGCTGGAAGTTGCAACTTCTGCT TTACCAACTGGAGTTTTCAACCAGTCAATGAACTGGATAGCTTTAGCGCATTCAAAAGCCTACGCCTTTATTCATGAAAACTGTATAAATCCAGTGGTTG GGGTAGCACATCATGTGTCATATATGAGACCTTATGGTCTCTTTGATGTTTCCGCAGTTCAGTTTGCAAACTCCCTTACAATATTCCCCTTCATTGATAG TATAGCAGAGAAGCTTGATTATATAGGCATCAACTACTACGGACAGGAAGTGGTTTCAGGTGCCGGGCTGAAGTTAGTAGAGACTGATGAATACAGCGAA TCGGGACGTGGGGTATACCCCGATGGCTTGTTTCGCGTTCTACTTCAGTTCCACGAGCGATACAAACATTTAAAGGTACCCTTCATCATTACCGAGAATG GAGTCGCGGACGAAACAGATGTCATCCGGATGCCATATCTGTTGGAACACCTGCTTGCGGTCTATGCAGCCATGATTTTGGGCATTCCTGTGCTTGGTTA CCTGTTCTGGACCATTTCTGACAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTCGGACTCGTAGCTGTTGATCGGAACAATAATCTTGCACGGAAT CCTCGTCCTTCTTACCATCTTTTCTCCAAGGTGGCAAGATCAGGTAAGATTACAAGGGAAGACAGGGAACGGGCTTGGGGTGAGCTTCAAAGTGCTGCCA AAGAGAAGAAAACCAGACCATTTTACCGTGCGGTGAATAAGTACGGCCTGATGTATGCAGGTGGGCTTGATGAACCAATTGAGAGGGAGTACATTGCAAG AGATTGGAGATTTGGACATTATGAGATGGAAGGTCTGCAAGACCCATTAAGCCGGCTGTCGAGATGTGTTGTTCGACCATTCATCAGGAAAAGAAAAGGA AGGAGAATTGCTGAACCTGTCGTTCTTCAGCCTCTTGCAGCATGA
AA sequence Show only first row Show all	>Lus10043048 pacid=23167909 polypeptide=Lus10043048 locus=Lus10043048.g ID=Lus10043048.BGIv1.0 annot-version=v1.0 MAFLTLVVSATKVAGVLVSLTVASNAISFWRFQKKNLKSFEPGIDETSEVLAAFNVDGGESEFFFGLATAPAHVEDRLNDAWLQFAEETPAGVSLPQGDL QPADAVLVSAGEEGGSQQASVSPKELAKVVKRKKSIKVSMEAMIRGFEKYTEEEEEEVPLPSEEFHHNVAAWHNVPHPMGIDWTRIMPDEPVNGLKDAVN FAALERYKWIISRVHSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVDAVSELVDYWITFNEPHIFCMLTYCAGAWPGGHPDMLEVATSA LPTGVFNQSMNWIALAHSKAYAFIHENCINPVVGVAHHVSYMRPYGLFDVSAVQFANSLTIFPFIDSIAEKLDYIGINYYGQEVVSGAGLKLVETDEYSE SGRGVYPDGLFRVLLQFHERYKHLKVPFIITENGVADETDVIRMPYLLEHLLAVYAAMILGIPVLGYLFWTISDNWEWADGYGPKFGLVAVDRNNNLARN PRPSYHLFSKVARSGKITREDRERAWGELQSAAKEKKTRPFYRAVNKYGLMYAGGLDEPIEREYIARDWRFGHYEMEGLQDPLSRLSRCVVRPFIRKRKG RRIAEPVVLQPLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10043048 [exp]	0	1
AT1G10310			NAD(P)-binding Rossmann-fold s...		Lus10042410 [exp]	2.2	0.8498
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	4.5	0.8412
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021279 [exp]	6.3	0.8400
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	9.5	0.8416
AT3G03420			Ku70-binding family protein (....		Lus10032105 [exp]	9.8	0.8184
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	10.4	0.8448
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	10.4	0.8387
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	15.9	0.8181
AT2G38660			Amino acid dehydrogenase famil...		Lus10043398 [exp]	16.1	0.7782
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	18.7	0.8131

Compare expression of checked genes

Lus10043048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.