Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12410 111 / 3e-30 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G36110 108 / 7e-29 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12430 103 / 5e-27 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12470 102 / 6e-27 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12460 101 / 3e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12440 100 / 3e-25 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12420 73 / 7e-16 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT4G13870 57 / 1e-09 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT5G06450 42 / 0.0001 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039164 [exp] 111 / 3e-30 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10013769 [exp] 110 / 9e-30 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10029479 [exp] 95 / 4e-24 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029478 [exp] 82 / 2e-19 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039591 [exp] 72 / 1e-15 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010357 [exp] 48 / 2e-06 AT3G11770 66 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036491 [exp] 48 / 2e-06 AT3G11770 64 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028700 [exp] 103 / 3e-27 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.006G031400 [exp] 101 / 2e-26 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.011G116000 [exp] 97 / 4e-25 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.017G059200 [exp] 67 / 5e-13 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.019G021900 [exp] 55 / 4e-09 AT3G11770 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G185500 [exp] 50 / 3e-07 AT3G12410 45 / 1e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028501 [exp] 47 / 2e-06 ND / Potri.016G028400 [exp] 46 / 4e-06 ND / Potri.006G031300 [exp] 44 / 2e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10043049 pacid=23168113 polypeptide=Lus10043049 locus=Lus10043049.g ID=Lus10043049.BGIv1.0 annot-version=v1.0 ATGAATTCTGCCATGGCGATCGAGTCTCCCGATGATTACGACCTGCACCGTGAGCGCACATTCACCCTCCGTTTATTCGACAACCGCAGGATTCGGACCA CCGTCACTTCTACTCCTTCCGTGGTACGCAAATGGATCTGGTACTCGCTCGAAAAACACCGCTACCTTCGCCACAAGCTTGTGGTTGGGCTCGGCGTCCA ATGGCGCGCTCCCTACGACACATCCGCCGCAACTCTCCAGCTATGCATCGGCTCCCGCTGCCTGATCTACCAACTCCGACACGCCGGCTACATCCCTCGC AGTCTCGAGCGGTTCCTTGCCGACACTGACATCACTTTCGTCGGCGTTCAGAACCACAGGGATGCAGATATGCTGCGGGAGCATGACCTCCAAGTGGGTA CGCTTCTTGATCTCTGTGACATCTCTGCTCAATCCAGAGGATTTGGTAGGAATTCTTCGATGGAGGATCTGGCGCTGAGGATTTTGGGTTATGAGGGAGT TCGTAAGTCTGTGTATGTTGGTATGAGTAATTGGAATGCTGATTGGCTCTCTGATGAGCAAGTGCTGTATGCTTGTGTTGATGCTGTTGTCAGTTTCATG CTCGGAGTTGAATTGGAAGCCTGGAGGTGGAACTGA
AA sequence Show only first row Show all	>Lus10043049 pacid=23168113 polypeptide=Lus10043049 locus=Lus10043049.g ID=Lus10043049.BGIv1.0 annot-version=v1.0 MNSAMAIESPDDYDLHRERTFTLRLFDNRRIRTTVTSTPSVVRKWIWYSLEKHRYLRHKLVVGLGVQWRAPYDTSAATLQLCIGSRCLIYQLRHAGYIPR SLERFLADTDITFVGVQNHRDADMLREHDLQVGTLLDLCDISAQSRGFGRNSSMEDLALRILGYEGVRKSVYVGMSNWNADWLSDEQVLYACVDAVVSFM LGVELEAWRWN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	0	1
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	1.0	0.9771
					Lus10015131 [exp]	2.0	0.9621
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10041592 [exp]	3.0	0.8655
AT4G08910			unknown protein		Lus10025524 [exp]	3.6	0.8521
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	4.2	0.9130
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	4.2	0.8315
					Lus10004133 [exp]	4.6	0.8739
					Lus10035120 [exp]	5.3	0.8988
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024498 [exp]	5.4	0.8096
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	6.9	0.8831

Compare expression of checked genes

Lus10043049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.