Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20530 533 / 0 Protein kinase superfamily protein (.1) AT1G61860 454 / 7e-160 Protein kinase superfamily protein (.1) AT5G18610 456 / 1e-158 Protein kinase superfamily protein (.1.2) AT3G07070 452 / 1e-158 Protein kinase superfamily protein (.1) AT5G13160 451 / 1e-157 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 447 / 3e-157 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G24790 442 / 2e-155 Protein kinase superfamily protein (.1) AT4G13190 425 / 3e-148 Protein kinase superfamily protein (.1) AT1G07870 418 / 5e-145 Protein kinase superfamily protein (.1.2) AT1G20650 414 / 3e-144 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011148 [exp] 687 / 0 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 595 / 0 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10019621 [exp] 552 / 0 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10033966 [exp] 464 / 7e-162 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 464 / 7e-162 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011866 [exp] 458 / 9e-161 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10041426 [exp] 454 / 7e-160 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 457 / 8e-160 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040350 [exp] 454 / 2e-159 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421400 [exp] 563 / 0 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 527 / 0 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.004G018500 [exp] 464 / 6e-164 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 466 / 2e-162 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 464 / 8e-162 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 458 / 1e-161 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 459 / 1e-160 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 457 / 6e-160 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 454 / 2e-159 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 451 / 7e-159 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10043050 pacid=23168396 polypeptide=Lus10043050 locus=Lus10043050.g ID=Lus10043050.BGIv1.0 annot-version=v1.0 ATGCTGAGGATCAGGACCAGAAAGGTTATCAGAATGAATTGCTTTTCTTGTTGTTCATCAGAAGCCAAACTCAGCAGAAAGTCTTTGCGGAAGAGCATCA AGAGTTACAAGGACACTAAAGCTTTGGCATCGTTTGCCAACTTCTCATTCAAAAGTGATGGTAGCAGGAAAAGGTACATAGCAGAAGAAGTAAAGAAAAT TGGAAAAGGGAACATATCTTCCAAGATATTCTCATTGCGTGAAATCACAGTAGCAACTCAGAACTTCACACATGAAAACCAGCTTGGGGAGGGTGGCTTT GGGAGGGTCTACAAGGGCCAAATTGATGACATGGAAGTAGCAGTAAAGCAACTAGACAGAAATGGGTTTCAAGGGAACAGAGAATTCCTGGTGGAGGTTT TGATGTTGAGCCTTCTTCACCACCCTAACCTTGTCAATCTAGTTGGCTATTGTGCTGATGGTGACCAAAGAATCCTTGTTTATGATTATATGGCCAATGG CTCCTTGGAAGATCACCTTCTTGATTTGCCTGAGGGGAAAGGTCATTTGGATTGGAATACCAGGATGAAAGTTGCAGCTGGAGCAGCAAAGGGACTAGAA TACCTGCACGAAAGTGCCGATCCTCCTGTCATATACCGCGACTTCAAAGCATCAAACATATTGTTAGATGGTGAATTCAATGCAAAGCTGTCAGATTTCG GACTGGCAAAGCTTGGTCCGACTGGAGATAAGACGCATGTCTCCACAAGGGTGATGGGGACGTATGGCTATTGCGCACCGGAATATGCGTTGACAGGACA ACTGACATCGAAATCTGACGTCTACAGCTTTGGAGTTGTGTTCTTAGAGTTCATTACTGGGAGGAGAGTGATTGACAATTCAAGACCAACCGAAGAGCAG AATCTAGTTACCTGGGCATCACCATTGCTGAAAGACAGGAAGAAATTTGATCTACTGGCAGACCCACTACTGGAAGGAGACTACCCTCAAAAGGGTCTTC ATCAAGCACTTGCAGTAGCAGCTATGTGTCTCCAGGAGGAAGATTCAACAAGGCCATTGATGAGTGATGTCGTGACGGCTCTAGAGTATCTAGCAACGGA CAATAAAGGCGCAGTGGATTTAGAGGAACCAGATGACGACGACGATGAGGGTGAAGAAGACGAGGATTAA
AA sequence Show only first row Show all	>Lus10043050 pacid=23168396 polypeptide=Lus10043050 locus=Lus10043050.g ID=Lus10043050.BGIv1.0 annot-version=v1.0 MLRIRTRKVIRMNCFSCCSSEAKLSRKSLRKSIKSYKDTKALASFANFSFKSDGSRKRYIAEEVKKIGKGNISSKIFSLREITVATQNFTHENQLGEGGF GRVYKGQIDDMEVAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYDYMANGSLEDHLLDLPEGKGHLDWNTRMKVAAGAAKGLE YLHESADPPVIYRDFKASNILLDGEFNAKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLTSKSDVYSFGVVFLEFITGRRVIDNSRPTEEQ NLVTWASPLLKDRKKFDLLADPLLEGDYPQKGLHQALAVAAMCLQEEDSTRPLMSDVVTALEYLATDNKGAVDLEEPDDDDDEGEEDED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20530			Protein kinase superfamily pro...		Lus10043050 [exp]	0	1
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	6.2	1.0000
					Lus10011759 [exp]	8.8	1.0000
					Lus10024550 [exp]	12.1	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	12.5	1.0000
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10027433 [exp]	14.0	1.0000
					Lus10013545 [exp]	15.3	1.0000
AT4G24975			Plant self-incompatibility pro...		Lus10032383 [exp]	17.7	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	18.5	1.0000
					Lus10017303 [exp]	19.7	1.0000
					Lus10018807 [exp]	20.8	1.0000

Compare expression of checked genes

Lus10043050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.