Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16050 242 / 9e-72 Aminotransferase-like, plant mobile domain family protein (.1) AT1G32120 239 / 3e-68 unknown protein AT1G51538 231 / 2e-67 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50830 230 / 1e-66 Aminotransferase-like, plant mobile domain family protein (.1) AT5G18510 224 / 5e-65 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50790 223 / 1e-63 Plant mobile domain protein family (.1) AT1G50820 216 / 4e-63 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50750 148 / 1e-37 Plant mobile domain protein family (.1) AT1G50770 92 / 3e-19 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50760 56 / 1e-09 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017876 [exp] 69 / 1e-12 AT1G32120 82 / 3e-17 unknown protein Lus10001737 [exp] 52 / 1e-06 AT2G04865 636 / 0.0 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 46 / 9e-05 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020970 [exp] 45 / 9e-05 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10032693 [exp] 40 / 0.0003 AT2G25010 52 / 3e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10042711 [exp] 40 / 0.0008 AT2G25010 50 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10043051 pacid=23168256 polypeptide=Lus10043051 locus=Lus10043051.g ID=Lus10043051.BGIv1.0 annot-version=v1.0 ATGAGCTCTACTCATAGCTTCAGGGAGGATCGCCGATTGATCATGGAAATGGCGGAGAAATGGTGTCCTGAAACCAACACGTTCGTCTTCCCCTGGGGGG AAGCAACGGTCACCCTCGAGGACGCGCTGATTCTCGGCGGCTTCTCTGTTTCCGGCGACCCATTTTTCGCCTGTTCCGAGGAAATCGCAGAGAAATTGAA GCGAGTTGCTGAAAGAATTCGGAGAACTACTTCCGATGAGGAGTTCCAGGACGAATGGATGAGTCATTTCATGTCCAGCCGCAGGAGCGAGATGATCATG GAGCACCAAGCTTTTCTTTCACTGTGGCTGGATAGGTACGTTCTGAATGATTCACAAGGAACAACTATGAAATCCTATGTTTACTCAGTCGCTGCTCATT TAGCTAGAGGCAAACCTGTAGCGCTTGCTCCTGTAGTCCTGGCAAACATTTACAGGGATTTTAGCTTGTTGAAAGCAACAATCGTGTCTGCTTCGAAAAT GGGGATGATAACATCTGAACCTGATAATGATGAAGTAATGGCTGTCAATCTGTGGTCTTTACTTCATCTCGTCCAGCTATGGGCTTGGGAGAGGTTTCCT AAGCTCCGTCCAGTACCAAATTCGATTCAACCCGGTGATCCGAGATCTACGATGTGGGCCGGTTTGAGTAGCAGGAGAGTTCGAGATATGAAGCTGGCTT TGGATTCGGCAGGAGATACTTTCAGGTGGCGGCCTTACGCTGTTTCGGTTCATGGTTGGAAGTGTCCTGAGTATTTGTACAGGGAGAAAGAAGAATGGCT GGATAGTACCATGGGAGGAAGTAATCATGATGATCGTAGCTCGCTGTCATATGGTTTGTGCTTGAGGGTATCGGAACTGGTTGGTCAAGGTTGTATTGAG TTGTATCTACCGCATCGGGTTGCAATGCAGTTCGGGATGGACCAAGACCTTCCTAATATTGTGGCTCCATCGAACGAGTGTCACGAAATCGTTTGGCTCG CTTATGCTAGACCGTTATCTGGTGATGTCCATGTTTCGTCTTGGTTGTTCGAACCTGATGTTACTGTTGAGTATCTGAAGTGGTGGAGAGAGCCGATGTT CTCGTCTCTTGAAGGCATGCCAAGTGGCGTTGCGAGACGAAGAAGAACTGCAAGCAAGAGGAAACGGCTGGCGAGTCTGTATTCTCAACAAGGAAGAAAG GAAGCTAACGATGATATAGCAGATCCAGTTAGAAATGATGATTATGATGATGATCTTCCTATTTCAGTTGCCATGAAAAAGTTTGCTCTGAGGAAAGAAT CATCGGTTTCTGCTGGTTTCGCAACTGACCGCGCTTGTGTCTCGCCAGCAAAAGACTTCCCGAGTACTCCACCGGTGAACCAGGCTCCTCTGATTACTTC TCTATCCATAACAGCCTCTTCCGAGGAGGGTTCAATGGCGGCGAACCCTGTGATTCCATTGGAGCATTCAAGGAGCATAGATAATAATAATATAGGAGGA GGAGGAGGAGGAGGAGGAGAGAGCAGTGGCGATAAAGGGAAGGGCATAATGAAAGCATCACTTATGGATGAGATTTTACAACTGGAGAGAGCACTTGAGG AGCTAAGAGCCAGAACATACAGAAAAATCAAGCTTGAAAAGGACTAG
AA sequence Show only first row Show all	>Lus10043051 pacid=23168256 polypeptide=Lus10043051 locus=Lus10043051.g ID=Lus10043051.BGIv1.0 annot-version=v1.0 MSSTHSFREDRRLIMEMAEKWCPETNTFVFPWGEATVTLEDALILGGFSVSGDPFFACSEEIAEKLKRVAERIRRTTSDEEFQDEWMSHFMSSRRSEMIM EHQAFLSLWLDRYVLNDSQGTTMKSYVYSVAAHLARGKPVALAPVVLANIYRDFSLLKATIVSASKMGMITSEPDNDEVMAVNLWSLLHLVQLWAWERFP KLRPVPNSIQPGDPRSTMWAGLSSRRVRDMKLALDSAGDTFRWRPYAVSVHGWKCPEYLYREKEEWLDSTMGGSNHDDRSSLSYGLCLRVSELVGQGCIE LYLPHRVAMQFGMDQDLPNIVAPSNECHEIVWLAYARPLSGDVHVSSWLFEPDVTVEYLKWWREPMFSSLEGMPSGVARRRRTASKRKRLASLYSQQGRK EANDDIADPVRNDDYDDDLPISVAMKKFALRKESSVSAGFATDRACVSPAKDFPSTPPVNQAPLITSLSITASSEEGSMAANPVIPLEHSRSIDNNNIGG GGGGGGESSGDKGKGIMKASLMDEILQLERALEELRARTYRKIKLEKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16050			Aminotransferase-like, plant m...		Lus10043051 [exp]	0	1
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001659 [exp]	7.9	0.8585
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009129 [exp]	11.6	0.8556
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016225 [exp]	13.6	0.8556
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10013753 [exp]	16.4	0.8538
					Lus10027558 [exp]	18.2	0.7418
					Lus10013255 [exp]	18.6	0.8524
					Lus10013259 [exp]	20.3	0.8524
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	22.0	0.8524
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	23.5	0.8524
					Lus10024141 [exp]	24.9	0.8524

Compare expression of checked genes

Lus10043051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.