Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27060 819 / 0 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 691 / 0 ARM repeat superfamily protein (.1) AT2G07170 196 / 4e-52 ARM repeat superfamily protein (.1) AT1G27210 151 / 5e-38 ARM repeat superfamily protein (.1) AT1G59850 134 / 8e-33 ARM repeat superfamily protein (.1) AT5G62580 124 / 5e-29 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011149 [exp] 1585 / 0 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10040047 [exp] 1009 / 0 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019618 [exp] 659 / 0 AT4G27060 507 / 8e-171 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019616 [exp] 320 / 3e-102 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10027590 [exp] 196 / 9e-52 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10008545 [exp] 129 / 2e-30 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10019617 [exp] 116 / 1e-29 AT1G50890 99 / 2e-24 ARM repeat superfamily protein (.1) Lus10010730 [exp] 124 / 5e-29 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10033129 [exp] 107 / 7e-24 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421200 [exp] 1092 / 0 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 1080 / 0 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 193 / 6e-51 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 156 / 2e-39 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 152 / 4e-38 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 101 / 6e-22 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 100 / 1e-21 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043053 pacid=23168428 polypeptide=Lus10043053 locus=Lus10043053.g ID=Lus10043053.BGIv1.0 annot-version=v1.0 ATGAGCTCGCAGGCATCCAAATCTGCACCCAGAAATGCTAAACCCACGTCCTCCCAAACCCAACAACCCCCCACCTCCAGATCTTCTTCCCTGGCCGCCC ACTTGGCAATGGTGGAGCTGAAGCAGCGAATCCTCACTTCCCTCTCCAAGCTCGCCGACCGGGACACTCATCAGATCGCTCTCGAAGATCTCCAATCCAT CACAACCTCCCTTTCCCCGGAAACCCTACCAATGCTGCTCAATTCCCTATACGACACTCTCTCCGATCAGTCCACCGCCAACCCCTCCGTCAAGAAGGAG TCCCTAAACTTGCTCAGATTCGTCTGCCAAACACATCGCGAATTGACGCTCCCGCATCTCACCAAAGTCATCACCCAAATTGTCAAGAGGCTCAAGGACT CCGATTCCGGTGTCAGAGATGCTTGCCGCGATGCCATTGGCGTTTTGTCTGGTTTATACCTCGGAGAAGGCGGCGGCGGGGATGGAAATGCCGCCGGCGG GTCGTCTATGGTGGGGTTGTTCGTCAGACCTCTGTTTGAGGCCATGGGGGAACAGAACAAAGTTGTGCAGGCTGGGGCTTCCACATGTATGGCCAGAATG ATCGAGTGCGCAGTTGCGGTGGATAAGGACGGTGGATCTGGCTGTGCTCCAGTAGCTGCTTTTCAGAAGCTTTGTCCCAGGATTTGTAAGTTGCTTAGTG GCCAGAATTTCGTGGCGAAAGCAGCTTTGCTAGGCGTTGTGGCGAGTTTGTCCCAGGTTGGGGCAGTTGCCCCACAAAGTTTTCCTTCGTTGCTGCAGAG TATTCATGACTGCCTTAGCAGTGCAGATTGGGCAACAAGGAAGGCTGGAGCTGAGGCTTTAAGTGCCATTGCAGCCCATTCATGCAGCCTAGTTTCAGAA GAAGCTGCTGATTCCATATTAACAGCGCTTGAGGCTTGTCGTTTTGATAAGATAAAACCTGTCAGAGATAGCATGAATGAGGCATTGCAGTTGTGGAAGA AGATCGCAGGGAAAGGAGGAGATGGAGTTTCAGATGACCAGAAAGCTTCCTCTCCAGGTGGCGAAGATCGAGAAACCGCAGAACTACTAGACAAGAACCT GAACTCTAAGAATAGAGTAGAGTCTTCAACGAGAGGTTCACCAAATGGCTCTTCCCCAACAACTGATTCAGCTGCTGAGGCCAAAGCTGGGAGCATACCG GACAAGGCGGTTGTAATATTGAAGAAGAAAGCACCAGCTCTGACAGACAAAGAGGTGAACCCGGAATTCTTTCACAAACTTGAAACAAGGGCTTCTGGCG ATGTTGAGGTTGTTGTTTCTCGTAGATGTGTTAATACTTCTAGTCTTAACAATGAGGAAGAACCAGAATCAAAGAACATGGAGTCAAAAGCAAGGTCAGA CCACACTGCAAACAGCAAATCAGAAGAGCTGTATTTCAATAACAAATACCGTATAGGTGATAGAGGAATCTCCGGGAGAGATTCTAGAAGTAGAGCATTT GATGATGAAATCAACAGCAGGGAGACAACAACTGCCGATCGTGCCGGTCTATCCAAAGTGGAAGGACAATCGGAAGGATCCTTGGCAAATAGTAGAGGAA ATTGGTTGGCGATGCAGAGACAGTTGCTGCAACTAGAAAGACAGCAGACTCATCTTATGCATATGCTTCAGGATTTCATGGGCGGATCTCATGATAGCAT GGTGACCTTGGAAAACAGAGCTCGAGGTCTTGAGAGAGTCGTGGAAGACATGGCACGGGATCTGTCTTTCTCCGCTGCCAGGAGAGGTGGTGGGTTTCCT TTGGCCTTTGAAGGTACATCCTCGAATAGATCATTAGGAAAGTACAATGGCTTATCGGATTATTCCAGTCCGAACTACAATGGCCGGGTTCCATTTGGGG ATCGATTTGCACAATCCGATGTTATTGGAAGGGGGAGAAATCCTCACTGGAGGGGCGAGCCATCTGATATTCGGGATAATTTCCCCTCGTATGGTTCATC AAGAAATGGTCATCATGGTGGCTCCAGAAGAGGGTCACCTAAATCTGATCACGAAAATGATCAACAAGTTGGGAGCAGAAGAGGTTGGGATAAAGGCGGT GGACCACCCTCTAGGCTTGGTGAAGGGCCATCGGCTAGAAGTGTGTGGCAGGCGTCCAAAGACGAAGCTACCTTGGAAGCCATCCGTGTTGCTGGGGAAG AAGACAGAGAAGTATCACGGACTGCCAGGGTGGCCATTCCCGAGTTGACTGCTGAAGCGATGATAAACGATAATGTCGAACAAGAGCGAGACCTGGTTTG GACTTCGTGGATGAATGCCATGGACGCCCTTAAAGTCGGAGACATCGATACAGCTTACGCTGAAGTCACTTCCACCGGAGATGATCAGTTGCTTGTGAAG ATAATGGACAGGACAGGCCCTGTAGTTGACCAACTTACAAGTGAGACAGCGTGTGAAGTATTGCATGGTATTGCTCAGTTCTTGCTGGATCATAACTTGT TCGACATCTCTTTCTCATGGATTCATCAGTTGGTAGATGTTGTGGTGGAGAATGGACCTGATGTTATGGGGATTCCCATGGAACTGAAGAGGGAACTCTT GCTGAACCTACATGAAGCATCGACGACAATGGAAATGCCAGAGGACTGGGAAGGACTGGATCCTGAACAACTTCTACTGCAGTTGGCATCGGCTTGGCGA ATTGAACTTCAACAGTTTGACAAGTAA
AA sequence Show only first row Show all	>Lus10043053 pacid=23168428 polypeptide=Lus10043053 locus=Lus10043053.g ID=Lus10043053.BGIv1.0 annot-version=v1.0 MSSQASKSAPRNAKPTSSQTQQPPTSRSSSLAAHLAMVELKQRILTSLSKLADRDTHQIALEDLQSITTSLSPETLPMLLNSLYDTLSDQSTANPSVKKE SLNLLRFVCQTHRELTLPHLTKVITQIVKRLKDSDSGVRDACRDAIGVLSGLYLGEGGGGDGNAAGGSSMVGLFVRPLFEAMGEQNKVVQAGASTCMARM IECAVAVDKDGGSGCAPVAAFQKLCPRICKLLSGQNFVAKAALLGVVASLSQVGAVAPQSFPSLLQSIHDCLSSADWATRKAGAEALSAIAAHSCSLVSE EAADSILTALEACRFDKIKPVRDSMNEALQLWKKIAGKGGDGVSDDQKASSPGGEDRETAELLDKNLNSKNRVESSTRGSPNGSSPTTDSAAEAKAGSIP DKAVVILKKKAPALTDKEVNPEFFHKLETRASGDVEVVVSRRCVNTSSLNNEEEPESKNMESKARSDHTANSKSEELYFNNKYRIGDRGISGRDSRSRAF DDEINSRETTTADRAGLSKVEGQSEGSLANSRGNWLAMQRQLLQLERQQTHLMHMLQDFMGGSHDSMVTLENRARGLERVVEDMARDLSFSAARRGGGFP LAFEGTSSNRSLGKYNGLSDYSSPNYNGRVPFGDRFAQSDVIGRGRNPHWRGEPSDIRDNFPSYGSSRNGHHGGSRRGSPKSDHENDQQVGSRRGWDKGG GPPSRLGEGPSARSVWQASKDEATLEAIRVAGEEDREVSRTARVAIPELTAEAMINDNVEQERDLVWTSWMNAMDALKVGDIDTAYAEVTSTGDDQLLVK IMDRTGPVVDQLTSETACEVLHGIAQFLLDHNLFDISFSWIHQLVDVVVENGPDVMGIPMELKRELLLNLHEASTTMEMPEDWEGLDPEQLLLQLASAWR IELQQFDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	0	1
AT5G38880			unknown protein		Lus10034366 [exp]	2.4	0.8460
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	3.0	0.8527
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	4.5	0.8515
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	4.5	0.8410
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014570 [exp]	4.9	0.8285
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10016945 [exp]	5.7	0.8162
AT4G28310			unknown protein		Lus10033688 [exp]	7.5	0.8136
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10014749 [exp]	12.7	0.8096
AT3G53540			unknown protein		Lus10024434 [exp]	13.9	0.7925
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	14.1	0.8218

Compare expression of checked genes

Lus10043053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.