Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50900 226 / 8e-77 LTD, GDC1 LHCP translocation defect, Grana Deficient Chloroplast 1, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011151 [exp] 300 / 4e-106 AT1G50900 225 / 1e-76 LHCP translocation defect, Grana Deficient Chloroplast 1, Ankyrin repeat family protein (.1) Lus10002765 [exp] 38 / 0.0007 AT4G18950 132 / 1e-37 Integrin-linked protein kinase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420900 [exp] 244 / 1e-83 AT1G50900 234 / 1e-79 LHCP translocation defect, Grana Deficient Chloroplast 1, Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043055 pacid=23167948 polypeptide=Lus10043055 locus=Lus10043055.g ID=Lus10043055.BGIv1.0 annot-version=v1.0 ATGGCTTCAATACCATGTACAACAACATCGCAGCTCCATGGCTCTTGGAATCAGCAGCCAAAGATGACTTCTTTGTTTCTGGGTAAGCGTAACCAGGTCG CCTGGGTCCGACCGCGCAGAATCAGAGCATCATCCAAAGTGACGAGAGTGAATGCGTGGTTTAAGTTCGGCAAGAATGGAGTTGATGCTGAAGGTGCTGG CATTTATGGCAGCCAGTCCCGTGATGACTTTGACAGAGATGATGTCGAACAGTATTTCAACTACATGGGAATGCTTGCCGTGGAAGGGACATATGACAAG ATGGAAGCACTGCTAACCCAAAACATCCATCCAGTGGACATCTTGCTGATGCTAGCTGCTTCCGAAGGCGATAAGCCCAAACTCGAAGAGCTACTACGAG CCGGTGCTAATTATGATGTCAAAGATGTCGACGGCAGGACAGCGCTCGATAGAGCTACTGATCAGGAGGTCAAGGACTTCATTCTTAGCTTCTCTACCCA GAAGGCCTGA
AA sequence Show only first row Show all	>Lus10043055 pacid=23167948 polypeptide=Lus10043055 locus=Lus10043055.g ID=Lus10043055.BGIv1.0 annot-version=v1.0 MASIPCTTTSQLHGSWNQQPKMTSLFLGKRNQVAWVRPRRIRASSKVTRVNAWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDK MEALLTQNIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTALDRATDQEVKDFILSFSTQKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	0	1
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10042587 [exp]	2.0	0.9825
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	2.0	0.9828
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	2.6	0.9753
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	3.5	0.9824
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	4.0	0.9804
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	5.2	0.9693
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10037629 [exp]	5.7	0.9731
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	6.3	0.9774
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	6.5	0.9755
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10002497 [exp]	8.5	0.9682

Compare expression of checked genes

Lus10043055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.