Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48160 158 / 4e-50 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011152 [exp] 257 / 2e-89 AT1G48160 176 / 1e-57 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045500 [exp] 190 / 8e-63 AT1G48160 188 / 1e-62 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1) Potri.015G036700 [exp] 182 / 1e-59 AT1G48160 189 / 7e-63 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01922 [flax] [poplar] SRP19 SRP19 protein
Representative CDS sequence Show only first row Show all	>Lus10043056 pacid=23168188 polypeptide=Lus10043056 locus=Lus10043056.g ID=Lus10043056.BGIv1.0 annot-version=v1.0 ATGGATGCATCAGGATCCGAAAATATAAAGAGATGGATTGTGTTGTATCCTGTCTACATAAACGCCAAGAAAACCATTGCCGAAGGCAGAAGAATAAGTG CTCAGAAGGCTTGTGAGAATCCCACTTGTATCGAGATTTCGGATAGCTGCAAACACCTCAGTCTTCGCTCTGCAATTGAGCTTGATAAGGCGTATCCGCG GGATTTCATGCAAAGAGGGAGGGTCAGAGTTCTGCTCAAAAGAGAAGATGGAACTCCTTACAATCCTGCCATTCCTACCAGACGATATAGCACTAATTTT GCTGGCTTCTGCTGCATCATTGGCCTCCTGGGTTGTAGTGCTCTCTGTCTTCTGATGAATGGTGGTGGTTGTACTGCAGGAAAAGAACTAATGCTCCGAG TTGCAGAGCTGGTGCCTCGACATTCAGGGAGGATTAGGAAGCAGGAACCTGCATCGACCTCAGCATCTGGAACATCAAAGTCGGAAAAGGGTAGAAAGAA GAAGAGGTAG
AA sequence Show only first row Show all	>Lus10043056 pacid=23168188 polypeptide=Lus10043056 locus=Lus10043056.g ID=Lus10043056.BGIv1.0 annot-version=v1.0 MDASGSENIKRWIVLYPVYINAKKTIAEGRRISAQKACENPTCIEISDSCKHLSLRSAIELDKAYPRDFMQRGRVRVLLKREDGTPYNPAIPTRRYSTNF AGFCCIIGLLGCSALCLLMNGGGCTAGKELMLRVAELVPRHSGRIRKQEPASTSASGTSKSEKGRKKKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48160			signal recognition particle 19...		Lus10043056 [exp]	0	1
AT1G08110			lactoylglutathione lyase famil...		Lus10021429 [exp]	9.5	0.8138
AT1G16430			Surfeit locus protein 5 subuni...		Lus10040343 [exp]	24.8	0.7575
AT2G03870		EMB2816	EMBRYO DEFECTIVE 2816, Small n...		Lus10035639 [exp]	27.1	0.7544
AT2G39960			Microsomal signal peptidase 25...		Lus10014838 [exp]	27.5	0.7435
AT4G29660		EMB2752	embryo defective 2752 (.1)		Lus10015598 [exp]	32.5	0.7228
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	34.5	0.7774
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	35.3	0.7626
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	37.9	0.7544
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	41.5	0.7732
AT2G20830			transferases;folic acid bindin...		Lus10018559 [exp]	41.6	0.7311

Compare expression of checked genes

Lus10043056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.