Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011153 [exp] 250 / 3e-83 AT1G50910 247 / 6e-77 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136400 [exp] 48 / 3e-07 AT1G50910 269 / 1e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043057 pacid=23168116 polypeptide=Lus10043057 locus=Lus10043057.g ID=Lus10043057.BGIv1.0 annot-version=v1.0 ATGGACGAAGATCAACCTAGCAGAGAATCCTCCTCTCTCATGGAGAAAGGAGACTTCTTGCCAACTGTACTGTCAATCTCCAACGACAATGAGCGGGAGA AGGAGCCTGATTGTATCCAAATGAGAGATGCAGTAGATGTTCTGGAAGTAGGAGAAAGTCCAGGAAAGGGTGGCCATGTGAATTCTACCTTTAGCTCTTC CTCAGATGGAAAACCATTGACACCAAACCTCGACTCAAAGAAAGTGGCGTTTGTTTCGCTGAAGAGATCTGCACCTACAACAGCTGCAGCATTCGTCTCT GTTAAAAGGCCAGCACCATCAACTTCCAATGCAACAACACTAGGGAATTCAAGGGAGAGTGAGAAGGAACCAGAAGGCAAGGAAGATTCTTTTTTCAATC TGCTAACATCTGGAGGAAATTTGAAAAATAGTCTATTCTGA
AA sequence Show only first row Show all	>Lus10043057 pacid=23168116 polypeptide=Lus10043057 locus=Lus10043057.g ID=Lus10043057.BGIv1.0 annot-version=v1.0 MDEDQPSRESSSLMEKGDFLPTVLSISNDNEREKEPDCIQMRDAVDVLEVGESPGKGGHVNSTFSSSSDGKPLTPNLDSKKVAFVSLKRSAPTTAAAFVS VKRPAPSTSNATTLGNSRESEKEPEGKEDSFFNLLTSGGNLKNSLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10043057 [exp]	0	1
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	1.0	0.8991
					Lus10019128 [exp]	4.7	0.8207
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10038187 [exp]	5.7	0.8342
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	5.8	0.8540
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	6.7	0.8380
AT5G40600		EMB1875	unknown protein		Lus10003647 [exp]	7.5	0.8450
					Lus10027225 [exp]	8.7	0.8216
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	9.5	0.8453
AT4G01590			unknown protein		Lus10006847 [exp]	10.5	0.8074
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10035541 [exp]	11.0	0.8394

Compare expression of checked genes

Lus10043057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.