Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50910 122 / 1e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011153 [exp] 258 / 2e-85 AT1G50910 247 / 6e-77 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136400 [exp] 175 / 2e-53 AT1G50910 269 / 1e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043058 pacid=23168382 polypeptide=Lus10043058 locus=Lus10043058.g ID=Lus10043058.BGIv1.0 annot-version=v1.0 ATGGGCAGTGAGATTGAAAGTGGTCAGGAAGAGAAATTGAAGTCTTTGCTGGAGCAGCTCCAGGCAGAATGCGGGGTCACCAGGGATTTGAGGCTTTTGC AATCTGCTAAACTTGACGACCTGGTGGCTTCTTGTTTCCATGTTATCACTGGAAGGAAACCCAAGCAAAAGATGTATCTGTTGGAAAGCTTGAAGTGGAG TAAAAGGGCCTCTGGAGCACCCAATTTTATGGAGAGACTTCTGGGAGCTGCACGTTTACTGTCACAGGTGTCTGTTTTGCTTGCTCAGTCTTTCTTCATG GAATTTTCCTTGGCAGTTTTGGCACTGCTTGCTCGCCTACGAGTATTGGTTCAGCAGATACTGCTCGATGTTGCTTCTTTGTCCAACACAGTATCTTCAA TCTCCATGAATAAGCAGTCTGTGAAGATAAATATGAAGGGAGCAGAGGTATTTCGGGAGTATTATCCTACCAACAAAGAATTTGTCAACCTAGAGTGTGA GTGGAAAGTTGATAAATTCGTCTTACTCGAAAGAATACAGAAAATTAATGTAAAAGAAGATGAAGAGAGTATAGAAACCCCCAATAATGGAAGAAAGGCT TTACGGTACTGA
AA sequence Show only first row Show all	>Lus10043058 pacid=23168382 polypeptide=Lus10043058 locus=Lus10043058.g ID=Lus10043058.BGIv1.0 annot-version=v1.0 MGSEIESGQEEKLKSLLEQLQAECGVTRDLRLLQSAKLDDLVASCFHVITGRKPKQKMYLLESLKWSKRASGAPNFMERLLGAARLLSQVSVLLAQSFFM EFSLAVLALLARLRVLVQQILLDVASLSNTVSSISMNKQSVKINMKGAEVFREYYPTNKEFVNLECEWKVDKFVLLERIQKINVKEDEESIETPNNGRKA LRY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50910			unknown protein		Lus10043058 [exp]	0	1
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	1.0	0.8847
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	2.0	0.8647
					Lus10024697 [exp]	2.6	0.8484
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10020784 [exp]	2.8	0.8808
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	4.6	0.8764
AT5G41800			Transmembrane amino acid trans...		Lus10001908 [exp]	5.5	0.8631
					Lus10019128 [exp]	9.0	0.8061
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10042030 [exp]	9.3	0.7674
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	9.5	0.8177
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	10.7	0.8114

Compare expression of checked genes

Lus10043058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.