Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 505 / 6e-170 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT1G50940 275 / 9e-84 ETFALPHA electron transfer flavoprotein alpha (.1) AT3G20660 105 / 2e-23 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT2G16130 84 / 2e-16 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 82 / 5e-16 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT3G18830 75 / 1e-13 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G18480 69 / 6e-12 AtPLT3 Major facilitator superfamily protein (.1) AT4G36670 68 / 2e-11 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT1G73220 64 / 2e-10 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G79410 61 / 2e-09 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033337 [exp] 710 / 0 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 606 / 0 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 509 / 5e-171 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 506 / 8e-170 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 457 / 3e-152 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 451 / 7e-149 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 442 / 2e-146 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10011156 [exp] 313 / 4e-99 AT1G50940 427 / 5e-151 electron transfer flavoprotein alpha (.1) Lus10027576 [exp] 301 / 3e-94 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003100 [exp] 612 / 0 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 593 / 0 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 581 / 0 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 478 / 5e-159 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 315 / 6e-95 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.011G135600 [exp] 286 / 4e-88 AT1G50940 467 / 5e-166 electron transfer flavoprotein alpha (.1) Potri.011G130533 [exp] 108 / 2e-24 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.004G151725 [exp] 100 / 6e-22 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 92 / 6e-19 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 81 / 2e-15 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01012 [flax] [poplar] ETF Electron transfer flavoprotein domain CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter CL0085 [flax] [poplar] FAD_DHS PF00766 [flax] [poplar] ETF_alpha Electron transfer flavoprotein FAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10043061 pacid=23167997 polypeptide=Lus10043061 locus=Lus10043061.g ID=Lus10043061.BGIv1.0 annot-version=v1.0 ATGTATGACAACACTGTTCCTTCTCTTCTTGATCAAAATCTCTCATTCAAGAACACGAATCCAAATTCTCCTTCATGGGTTTCATCCTCCATAGGACCTG ATCCCACCCCAAGCGAAAATGCGGTTCCAATTCATTCGATCATCAATGGAGCTCAAAAGCCAGAAGTTCACCTCCCTGTTCTCTCCACCGCTTTCTTCGT CTACCTCCGTTTCATCTCGGTTCTGATCGCCTCCGCTTATTACTTCTGCTCTTATGAGGGTCGATTGCTTCGCCGCCTCGCTACAGAGTCTCATTTTGAA CCATCCGGCGGATCAGCCGGCGACACCACCGGGAGTTCTACTGTGTTCCCCGCCGTAGAGCTTCACAGTAAGATCCAAGCGGTCCGCTCATCAGCTGACC CATCCGGCAATGGCTCATGGATCAGGAAGAACACCACAAGTAGCAGTTCCGTTATCGTCAGCGAGGGGGCAAAGAAGAGGAAGAGAGGTATTCCGTCTAA CGAACACATGGCGATTGCTCGAGCTATCAGAGCGTCTCTCCGGCCGGGCTTCTCATCGATTGTCTCTACTTCTCGATCCATTAGCACGTTGGTGATCGGC GAGCACGAAGGAGGCGTCGTGAAGCCTCCGACTCTGAGTGCAGTAGAAGCTGCCAAGTGTCTGGGCGAGGGCAACTCCGTCTCCGTGCTGTTGGCCGGAA CAGCCGATTCAGGTAAGTTTGTTCATCATCTAGCAGAACCATGGGCTAGGTTGATTCAATTAGTTCAGCTTAGAGACGATTACTCGCACATTATTGCTGC ATCCAACTCATTTGGGAAAAATGTGCTCCCACGAGTAGCAGCCCTTCTGGATGTTTCTCTTAGCACTGATGTTATTAGCATTTCTGGACCTAATCAGTTT ACCAGACCAATTTATGCGGGAACGCCCTTTCTACTGTCTGCTACACTGGCAGAAGCCCTTGTTTATTGTTTGTTAGATCGACATCCTTTCCCGAACCTAC ACTCGCAGCAGATTTTACCGCTGAGGCAGTACCTATTTCCCAGGTTGATCTCTCAGCTCTTGATGAAGGTGTCCGACTCATTTTGCCATTCAACTACAGA TTGTATAGCCAAGTCTAGATATGTGAAGCTTGCATCACAGGATACAGAACGCCCTGATCTAGGAAATGCTAAAGTGGTTGTCACTGGAGGTAGAGCCTTA AAAAGTGCTGAGAACTTTCAGTTGATTGAGAAGCTTGCAGAAAAACTTGGGGCAGCAGTTGGTGCCACTCGTGCTGCTGTAGATGCAGGATTTGTTCCAA ATGACCTTCAGGTCGGTCAGACGGGGAAAATCGTTGCCCCAGAACTGTACTTGGCTTTTGGCGTTTCGGGAGCAATCCAACATATAGCCGGCATGAGAGA TTCAAAGGTGATAGTAATGGTGGATCAGCCTGCAGGATACAGTGTGGATGAAGCTCTCCTCTCCGTAGGGTTCGGAAAGTACCAAATACTTGTGTGTATC TATGCTGGGATGGGTTGGATCTCAGAAGCAATGGAGGTGATGATTCTCTCATTCATAGGTCCAGTTGTGAAGTCCAAATGGGATCTAGATGCCAATCAAG AGAGCTTGCTTACCATTGTTGTGTTTTCCGGCATGCTAGTTGGGGCTTACACTTGGGGTGTCATTTCAGACAAACTTGGAAGGAGGAAAGGATTTGTGGT GACAGCATTCGTCACCTCTGCAGCCGGTTTGCTGAGTGCATTTGCCTGGAACTACACCGTGCTTCTAATTGCTCGTTGCTTGGTCGGTGTCGGACTCGGA GGTGGCCCTGTACTCTTTGCCTGGTACTTGGAGTTCGTACCTGCAACCAATAGAGGAATGTGGATGATTATCTTCTATGCATCATGGACAGTTGGAACGA TCTTCGAGGTCGCTTTAGCATGGATTGTAATTCCGACATTGGGTTGGAGGTGGCTGCTTGGTCTCTCTGCTATACCTTCATTTGCTCTCCTAGCATTTTA TCCTCTGACACCTGAGTCTCCACGATACCTATGCCTGAAAGGTCGAACAGACGACGCTCAGAAAATCATAGAGAAGATGGCGAAATCAAACAAGAAGCAA CTCCCTCCCGGCGTGCTTCAAACTGACCGTGAAATCGAGCTTCAACGAAAAGTCTCCGATGATGATCGTGGCAATGTGCTGGATAATTCTGGTCCTAGAT GGAAAGATGCCGACATGGGTCCTATCAGGACACTAATGATGCTTCTTTCTCCCAGGCTCATTCGTTCAACCATACTGTTGTGGCTCATTTTCTTTGGGAA TGCCTTCTCCTACTACGGCCTTGTTCTGCTCACTACTCAATTGAACCGGAAATCTCATTGCAACAACTCAAATTCGGCATCATCATCCAAGTCGGATGGT GGCGTGGACTATAAGAATGTGTTCATTACTACTCTAGCGGAATGTCCTGGGCTAGTGATATCGGCTCTCATGGTCGATAGGATCGGCCGCAGAATTTCTA TGGCAAGCCTGTTCTTTGTTTGTATCGTGTTCATGATGCCGCTGGTCGTACATCGATCTCCGCTTGTTACGACAATTCTCCTCTTCGGAGCGAGGATATG CATCACGGGAACGTTTTCAATTGCGTCTCTAATGGCTCCCGAGCTGTACCCGACTTCGGTGAGATCAACTGGATACGGAATAGCAAACTGCGTGGGGAGG ATTGGAGGGATGGTGTGTCCACTAGTGGCAGTGAAGTTGATGGAAGCATGCCATCAAAGGGAAGCGCTGCTGCTGTTTGTTGGTGTGTTTGTCGTAGGTA TGATTTCGGTTCTGCTAATACCTTACGATACCAAGGGCCGTGAACTGACAGAGAGCGTATCCAGTACAAAGCATCACCACCAAGAGCCTTGA
AA sequence Show only first row Show all	>Lus10043061 pacid=23167997 polypeptide=Lus10043061 locus=Lus10043061.g ID=Lus10043061.BGIv1.0 annot-version=v1.0 MYDNTVPSLLDQNLSFKNTNPNSPSWVSSSIGPDPTPSENAVPIHSIINGAQKPEVHLPVLSTAFFVYLRFISVLIASAYYFCSYEGRLLRRLATESHFE PSGGSAGDTTGSSTVFPAVELHSKIQAVRSSADPSGNGSWIRKNTTSSSSVIVSEGAKKRKRGIPSNEHMAIARAIRASLRPGFSSIVSTSRSISTLVIG EHEGGVVKPPTLSAVEAAKCLGEGNSVSVLLAGTADSGKFVHHLAEPWARLIQLVQLRDDYSHIIAASNSFGKNVLPRVAALLDVSLSTDVISISGPNQF TRPIYAGTPFLLSATLAEALVYCLLDRHPFPNLHSQQILPLRQYLFPRLISQLLMKVSDSFCHSTTDCIAKSRYVKLASQDTERPDLGNAKVVVTGGRAL KSAENFQLIEKLAEKLGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYLAFGVSGAIQHIAGMRDSKVIVMVDQPAGYSVDEALLSVGFGKYQILVCI YAGMGWISEAMEVMILSFIGPVVKSKWDLDANQESLLTIVVFSGMLVGAYTWGVISDKLGRRKGFVVTAFVTSAAGLLSAFAWNYTVLLIARCLVGVGLG GGPVLFAWYLEFVPATNRGMWMIIFYASWTVGTIFEVALAWIVIPTLGWRWLLGLSAIPSFALLAFYPLTPESPRYLCLKGRTDDAQKIIEKMAKSNKKQ LPPGVLQTDREIELQRKVSDDDRGNVLDNSGPRWKDADMGPIRTLMMLLSPRLIRSTILLWLIFFGNAFSYYGLVLLTTQLNRKSHCNNSNSASSSKSDG GVDYKNVFITTLAECPGLVISALMVDRIGRRISMASLFFVCIVFMMPLVVHRSPLVTTILLFGARICITGTFSIASLMAPELYPTSVRSTGYGIANCVGR IGGMVCPLVAVKLMEACHQREALLLFVGVFVVGMISVLLIPYDTKGRELTESVSSTKHHHQEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	0	1
					Lus10011724 [exp]	1.0	0.9882
AT1G22030			unknown protein		Lus10019943 [exp]	2.4	0.9832
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	2.8	0.9825
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	4.0	0.9839
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	6.0	0.9796
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	7.1	0.9819
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	7.3	0.9814
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	7.9	0.9734
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	8.0	0.9688
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	8.0	0.9806

Compare expression of checked genes

Lus10043061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.