Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27080 698 / 0 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 690 / 0 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 654 / 0 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT1G36050 93 / 2e-20 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 80 / 3e-16 Endoplasmic reticulum vesicle transporter protein (.1) AT1G22200 79 / 1e-15 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G54960 61 / 7e-10 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT5G60640 57 / 2e-08 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT2G32920 55 / 8e-08 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G21750 54 / 1e-07 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011157 [exp] 900 / 0 AT4G27080 718 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10040029 [exp] 793 / 0 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10019611 [exp] 744 / 0 AT4G27080 664 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10021024 [exp] 81 / 3e-16 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036158 [exp] 80 / 7e-16 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10027795 [exp] 79 / 1e-15 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036449 [exp] 76 / 2e-14 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10035503 [exp] 60 / 2e-09 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 59 / 5e-09 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419300 [exp] 773 / 0 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.011G135500 [exp] 763 / 0 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.005G168800 [exp] 90 / 2e-19 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 90 / 3e-19 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.006G023900 [exp] 86 / 3e-18 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.016G022800 [exp] 85 / 7e-18 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.001G206100 [exp] 85 / 9e-18 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 83 / 5e-17 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.008G040100 [exp] 61 / 1e-09 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.005G179000 [exp] 56 / 3e-08 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10043062 pacid=23168182 polypeptide=Lus10043062 locus=Lus10043062.g ID=Lus10043062.BGIv1.0 annot-version=v1.0 ATGACAGGCCTCTCCACGAGCAGGCTCAAATCTGTCGATTTCTACAGGAAAATACCCAGGGACTTGACTGAAGCATCACTTTCGGGTGCTGGATTATCCA TTATAGCTGCGCTCGCAATGCTGTTTTTGTTTGGAATGGAACTGAGTAATTATTTAACAATACGCCCATCTACATCTGTGATCGTTGACAGGAGCAATGA TGGGGACTATTTGCGCATTGATTTCAATATTAGTTTTCCAGCCCTCTCTTGCGAGTTTGCAGCAGTTGACCTGAGCGATGTGTTAGGAACTAACAGGTTA AATATTACAAAAACAGTGAGAAAGTTCTCTATAGACCACAATCTAAAGCCCACAGGCTCAGAATTTCACTCAGGCCCTATTATGCATCTCATCAAGCACG ATGAAAATGTTGGTGACAGTGAGGCTGAAGGTTCTGTGATACTCAATGCTCAAAATTTTGATATTTTCTCAAATCATTGGGTGATGTTTGACTACTTTAG TCCTCACTTCTTCTCATACTTGTTTCAGAAACCTTCTTGGGAAAAAGCAGCTAAAATTATATCAGAGAGGTATGGTCCTGATATTGATGGACGCATCATT TTGGCGAAGGTGGATTGCACTCAAGAAGGTGATTTGTGTAGGAGGCATCACGTCCAAGGGTATCCTTCCATTAGAATTTTCCGCAAGGGAAGTGATTTGA GGGAAGACCATGGACACCATGAGCATGAGTCCTACTATGGGGATCGTGATACTGACACCTTGGTGAAGACTATGGAAGATCTTGTTGCACCAATTCCAGC TCTGCATAAAAAACCCGACAATTCTACCGAGAATATCAAACGACCTGCACCCTCTACTGGAGGATGTAGAATAGAGGGATATGTCCGTGTTAAGAAGGTT CCTGGGAACCTTATCATTTCAGCCCGTTCAGGATCCCATTCCTTTGATCCTTCTCAAATGAACATGTCACATGTTATTTCGCATCTCTCGTTTGGTATGA AATTCTCACCCAGGGCGTTGGATGACGCAAAGAGATTGATGCCATATATTGGTCGAAGTCATGATAGGCTTAATGGGCGGACATTTATTAACCAGCAGGA TTTAGGTGCTAATGTTACTATAGAGCACTATCTTCAAATAGTTAAAACAGAGGTGGTATCGATAAGAGGGTCTCGTGAGCACAAGATAATAGAAGAGTAC GAGTATACAGCACACAGCAGCTTGGCTCAGAGTGTGGATATTCCCGTTGCGAAATTCCATTTCGAGCTCTCTCCGATGCAGGTTCTAATCACCGATGATC CCAAGTCATTTTCACATTTCATCACCAATGTTTGCGCCATCATCGGTGGAATATTCACGGTGGCGGGAATACTGGACTCCATTTTGCACAACACAATCCG GCTAGTGAAAAAGGTTGAGCTAGGCAAGAATTTTTGA
AA sequence Show only first row Show all	>Lus10043062 pacid=23168182 polypeptide=Lus10043062 locus=Lus10043062.g ID=Lus10043062.BGIv1.0 annot-version=v1.0 MTGLSTSRLKSVDFYRKIPRDLTEASLSGAGLSIIAALAMLFLFGMELSNYLTIRPSTSVIVDRSNDGDYLRIDFNISFPALSCEFAAVDLSDVLGTNRL NITKTVRKFSIDHNLKPTGSEFHSGPIMHLIKHDENVGDSEAEGSVILNAQNFDIFSNHWVMFDYFSPHFFSYLFQKPSWEKAAKIISERYGPDIDGRII LAKVDCTQEGDLCRRHHVQGYPSIRIFRKGSDLREDHGHHEHESYYGDRDTDTLVKTMEDLVAPIPALHKKPDNSTENIKRPAPSTGGCRIEGYVRVKKV PGNLIISARSGSHSFDPSQMNMSHVISHLSFGMKFSPRALDDAKRLMPYIGRSHDRLNGRTFINQQDLGANVTIEHYLQIVKTEVVSIRGSREHKIIEEY EYTAHSSLAQSVDIPVAKFHFELSPMQVLITDDPKSFSHFITNVCAIIGGIFTVAGILDSILHNTIRLVKKVELGKNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	0	1
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	1.0	0.8731
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	4.7	0.8069
AT3G48820			Glycosyltransferase family 29 ...		Lus10032547 [exp]	8.8	0.8207
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	10.2	0.8538
AT4G01040			Glycosyl hydrolase superfamily...		Lus10029447 [exp]	10.6	0.8159
AT3G44330			unknown protein		Lus10013307 [exp]	16.6	0.8309
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	21.9	0.7945
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	27.7	0.8049
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	27.8	0.7785
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10042728 [exp]	30.2	0.7677

Compare expression of checked genes

Lus10043062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.