Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27100 629 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 592 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 355 / 2e-118 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G28550 350 / 1e-116 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 211 / 4e-60 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 194 / 3e-54 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT5G41940 178 / 3e-49 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 132 / 1e-32 RabGAP/TBC domain-containing protein (.1.2) AT5G53570 119 / 2e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G49350 118 / 2e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011159 [exp] 865 / 0 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10022905 [exp] 354 / 1e-117 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 352 / 4e-117 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10004802 [exp] 194 / 6e-55 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10008872 [exp] 130 / 3e-32 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 129 / 4e-32 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 125 / 5e-32 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 129 / 2e-31 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 127 / 6e-31 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G135300 [exp] 709 / 0 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.001G419100 [exp] 706 / 0 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.005G227400 [exp] 368 / 1e-123 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G132900 [exp] 210 / 4e-60 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.017G023200 [exp] 209 / 1e-59 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.018G127500 [exp] 136 / 5e-34 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.006G066300 [exp] 130 / 5e-32 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.015G007400 [exp] 125 / 1e-30 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 123 / 7e-30 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 119 / 2e-28 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10043064 pacid=23168093 polypeptide=Lus10043064 locus=Lus10043064.g ID=Lus10043064.BGIv1.0 annot-version=v1.0 ATGTGGAGCTCCGCAGAGCCCGCGGATTCTTACTACGAGGTCCGCCCAGAGTGTACGGATGTTCCTAAAACCCGCTTCAAAATCAAGCCTGGTAAGACAT TGAGTGTGAGGAAATGGCAGACTTCATTTACCCCAGAAGGCCAACTGGATATAAGCAAGACCTTAGGTCGAATCCAACGTGGGGGGATCCATCCGACAAT TAGAGGAGAAGTTTGGGAATTTCTGCTTGGTTGTTATGATCCCAGGAGTACATTTGAGGAACGAGACGAGATTCGTCAGCGTAGAAGGGTTGAGTATGCT AAGTGGAAGGAGGAATGCCGGGAAACATTTCCGATTGTCGGAAGTGGCAAATTTATTACAGCCCCTTGCATCACAGAAGATGGTCATCCCGTTCAGGAGC CATTGGTTCTCTTAGAAACAGGTCATAATGTTCCAGCTGAACCTCCCAAGGTTAATGACGCTGCTGATTCTGATGAAGATGGGGAAGATGGTAAAGAAGA CGGTAAAGAAGATGGTAAAGAAGATGGGGAAGCTCCTGCTCAAGCTGTAATCGGTGAAACTGTTGCAAATGGTGAAACTCAATCCAGTATAAATATTTCA AGTTGCGAAATGTTGAAAGAGATTATTAGCACTCGTGGGGGTCTGGACAAGAAAGTCATCGAGTGGATGCTCACCTTGCATCAAATAGGTTTGGATGTCA TTCGTACAGACCGAACATTGGTGTTTTATGAGAAGCAAGAGAATTTGTCAAAACTATGGGATATCCTAGCTGTCTATGCTTGGATTGACACAGATGTCGG ATACTGTCAAGGAATGAGTGATCTTTGCTCCCCGATGATAATTCTTCTTGATGATGAGGCTGATGCGTTTTGGTGCTTTGAACGTCTGATGAGGAGATTG CGAGGAAACTTCAGATGTACAGAGAGCTCTGTTGGTGTGGAGTCGCAACTCATTAATTTGGCAGAAATTACTCAAGTTATTGATCCAAAACTTCACCAGC ATTTAGATGCTCTAGGTGGAGGTGACTATTTATTTGCTTTCCGGATGCTTATGGTTCTATTTCGGAGAGAATTCTCTTTCTGCGACTCGCTTTACCTTTG GGAGATGATGTGGGCACTTGAATATGACCCTGACTTGTTTGAGTTATATGAAGAGCCTGAAGCAGCAGAGGGATCAAAAGGAAGAACCAAGTCCATTCGC CACTATGGAAAGTACGAGAGGGAGAACATGAAAGCCGGTTCAGGAGCCGAAGCGCCCCTTCCCATCTCAGTATTCCTTGTTGCCAGTGTCTTGAAAGACA AAAGTGCAACTCTACTTCAAGAAGCCCGAGGTTTGGATGATGTTGTCAAGATATTGAATGACATTACTGGGAATTTAGATGCCAAGAAGGCCTGCACTGG TGCAATGAAACTTCACAAGAAGTATTTGAAAAAGCAAAGACCAGCCAGCCATTATGAGGCTGCAAGTATATATCATTTACCACCTGTTTTCTTTTATAAG TTATGTAATTATCTATTATATATATTTCGTTTCAATATCAAATGCACAGAAGCTTGA
AA sequence Show only first row Show all	>Lus10043064 pacid=23168093 polypeptide=Lus10043064 locus=Lus10043064.g ID=Lus10043064.BGIv1.0 annot-version=v1.0 MWSSAEPADSYYEVRPECTDVPKTRFKIKPGKTLSVRKWQTSFTPEGQLDISKTLGRIQRGGIHPTIRGEVWEFLLGCYDPRSTFEERDEIRQRRRVEYA KWKEECRETFPIVGSGKFITAPCITEDGHPVQEPLVLLETGHNVPAEPPKVNDAADSDEDGEDGKEDGKEDGKEDGEAPAQAVIGETVANGETQSSINIS SCEMLKEIISTRGGLDKKVIEWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWIDTDVGYCQGMSDLCSPMIILLDDEADAFWCFERLMRRL RGNFRCTESSVGVESQLINLAEITQVIDPKLHQHLDALGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFELYEEPEAAEGSKGRTKSIR HYGKYERENMKAGSGAEAPLPISVFLVASVLKDKSATLLQEARGLDDVVKILNDITGNLDAKKACTGAMKLHKKYLKKQRPASHYEAASIYHLPPVFFYK LCNYLLYIFRFNIKCTEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20440			Ypt/Rab-GAP domain of gyp1p su...		Lus10043064 [exp]	0	1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10033896 [exp]	2.0	0.7732
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	2.8	0.8122
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	7.3	0.7824
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10030056 [exp]	12.0	0.7815
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	16.4	0.7360
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10007933 [exp]	18.0	0.7551
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	19.0	0.7713
AT2G43235			unknown protein		Lus10025487 [exp]	19.7	0.6639
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	20.0	0.7608
AT5G13030			unknown protein		Lus10031224 [exp]	21.4	0.7355

Compare expression of checked genes

Lus10043064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.