Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20580 748 / 0 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 726 / 0 COBL11 COBRA-like protein 11 precursor (.1) AT4G16120 667 / 0 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT3G16860 623 / 0 COBL8 COBRA-like protein 8 precursor (.1) AT5G49270 620 / 0 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 139 / 2e-35 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G15630 135 / 4e-34 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 131 / 1e-32 COBL2 COBRA-like protein 2 precursor (.1) AT3G02210 125 / 1e-30 COBL1 COBRA-like protein 1 precursor (.1) AT1G09790 114 / 8e-27 COBL6 COBRA-like protein 6 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011160 [exp] 1242 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Lus10016847 [exp] 674 / 0 AT4G16120 860 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10037720 [exp] 663 / 0 AT4G16120 850 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10025045 [exp] 591 / 0 AT4G16120 675 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10010022 [exp] 540 / 0 AT4G16120 581 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10012598 [exp] 140 / 2e-35 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10031972 [exp] 139 / 3e-35 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 139 / 4e-35 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034379 [exp] 139 / 5e-35 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G135200 [exp] 852 / 0 AT3G20580 807 / 0.0 COBRA-like protein 10 precursor (.1) Potri.001G419000 [exp] 848 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Potri.010G001100 [exp] 682 / 0 AT4G16120 854 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.014G125300 [exp] 612 / 0 AT4G16120 766 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.004G167100 [exp] 138 / 6e-35 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1) Potri.004G117200 [exp] 134 / 2e-33 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 134 / 2e-33 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 133 / 3e-33 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.017G098700 [exp] 131 / 1e-32 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 131 / 1e-32 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10043065 pacid=23168009 polypeptide=Lus10043065 locus=Lus10043065.g ID=Lus10043065.BGIv1.0 annot-version=v1.0 ATGGAGGAGGTTCCCTCAAAATCCATTCTCAAATTTGTCTTCATCATCACCATCACAACCGCACTCCTCTTACATGCCTCCCACGCCCAATTATTCGACG CCGACGCCGGTGGCGGAGGCGGAGGCGATGACGCAGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGACGACGGGGATCAGAAAATCGCTCCACCGCCGGG ATTGGCGCGTTGTAACGGGATATTCCTAACCTACGCGTTCACATCACGCGAGAAGGAGTTCCCGCACGTGAAGAACGTGACGGCACAGGCATGGGCGTTC AAGGCCACGGCGGCGATCTTCAACACGGGGGAAGACGCGCTGAAGGCGTGGCAAATGTTCATCGGGTTCCACAACCGCGAGATCTTGGTGTCGGCCGACC CGGGGGCGCTTCTGGAAGGTGACGAGCTCCCCGCGTCGGTAGGGAAAANNNNNNNNNNNNNNNNNNNNNNAGGGGCCACGTTCGTGGGGACGGCAATGCC CGATCTGAAAAGCTCAATAGAGACGGCAGGGGATATGACGCAGATCTCGGCCCAGATTGATATCTCCGGGACGCAGTTTGGGCTGAATGCCAAGGCTATT CCCATGCCTAAGAGCATCAAGCTTGTTAACGATGGCTATACATGCCCCGCTGCCAAAAGGAAAGGAAAAAACTACATGGAAGTATGCTGCAGGGTGGATC CAAAGGCGAAGGCGAAGAAGAAACTGACCAAGGAAAAGAAGACCAAGTTCTTCCCGCGGCGTAACGGGGACCTAGAAATCACTTACGACATCATGCAAGC ATGGGGGAACAACTACGACGCGCAGATAACCATGGACAACAACAACCCGCTAGGCCGCCTCGACAACTGGAATCTCACCTGGCAATGGATGCACAACGAG TTCATCTTCTCCATGCGCGGCGCCTACTCTCGATCTCGCAACCTCGCCCAGTGCATCTACGGCCCTGTCGGGAAATACTACCAGGAAATGGACTTCTCCA CTGTCAGCAGCTGCGACCGTAACCCTATCATCTCCGACCTCCCTCCTGACCGCAAAGACGACCCTAAGATCGCCAAGCTCCCGTTCTGCTGCAAGAACGG AACCCTCCTCCCCACCATCATGGACGAGGAGCGAGCTCGTGCCATCTTTCAGATGCAGGTATTCAAGCTCCCTCCCAACTTGAACCGCACCGCCTTCGAC CCTCCCCAGAAGTGGAAGATCCAAGGGGTGTTGAATTCTCAGTACAAGTGCGGTCCGCCCGTCAGGATTGACCCCACCGTCTTCCCTGACCCCACCGGTC TGGCGGCGACTTATAATGCCATCGCCACGTGGCAAATCGTGTGCAACATCACTCGTCCCAAGGAGCGGCAAACGAGGTGTTGCGTCTCCTTCTCGGCATA CTACAACGATTCTGCTATTCCCTGCAACACCTGTGCATGCGGCTGCGATCAAAATTCTGGATGCAGCGAGAAAGGGAATCCGATGTTGCTTCCACCTGAT GCCCTTTTGGTCCCGTTCCAGAACAGGGCCAAGAAGGCTATTGCATGGGCTAAGTTGAAGCATCGTAAAGTGCCTAACCCAAGGCCATGCCCCGACAATT GTCCCGTCAGCATTAACTGGCATGTCAACTCGGATTTTGCTAGCGGTTGGACCGCTCGGATCACTCTGTTCAACTGGGACCAAACTCCATTCGAGGATTG GTTCGCGGCTATACAGATGGGAAGGGCGTATCCAGGATACGAAAACGTGTACTCATTTAACGGAACTAAGCTGCCCAAGCACAACAAGACCATCTTCCTA CAAGGGTTGCCGGGGTTGAACTATTTGGTGGCCGAAACCAACGGGACAAGACCAGGGGATCCCAGGATTCCAGGGAAGCAGCAATCGGTGATTTCCTTCA CCAAAAAGCAAACCCCGGGAATCAACATACCTCGCGGGGATGGGTTCCCCAAGAAGGTGATCTTCAACGGGGAAGAATGCGCGCTGCCCAAACATATACC GACACAAAGTGGGGGTCACAAGTCAGTCCGGCTCGATATGCTCACGGTTATGGTTGCTGCTACCGCGGTGGCGTTTGGAATCATGGGAGACTATGGACGT CTGTTGCATCGATGA
AA sequence Show only first row Show all	>Lus10043065 pacid=23168009 polypeptide=Lus10043065 locus=Lus10043065.g ID=Lus10043065.BGIv1.0 annot-version=v1.0 MEEVPSKSILKFVFIITITTALLLHASHAQLFDADAGGGGGGDDAGGGGGGGGGGDDGDQKIAPPPGLARCNGIFLTYAFTSREKEFPHVKNVTAQAWAF KATAAIFNTGEDALKAWQMFIGFHNREILVSADPGALLEGDELPASVGKXXXXXXXXGATFVGTAMPDLKSSIETAGDMTQISAQIDISGTQFGLNAKAI PMPKSIKLVNDGYTCPAAKRKGKNYMEVCCRVDPKAKAKKKLTKEKKTKFFPRRNGDLEITYDIMQAWGNNYDAQITMDNNNPLGRLDNWNLTWQWMHNE FIFSMRGAYSRSRNLAQCIYGPVGKYYQEMDFSTVSSCDRNPIISDLPPDRKDDPKIAKLPFCCKNGTLLPTIMDEERARAIFQMQVFKLPPNLNRTAFD PPQKWKIQGVLNSQYKCGPPVRIDPTVFPDPTGLAATYNAIATWQIVCNITRPKERQTRCCVSFSAYYNDSAIPCNTCACGCDQNSGCSEKGNPMLLPPD ALLVPFQNRAKKAIAWAKLKHRKVPNPRPCPDNCPVSINWHVNSDFASGWTARITLFNWDQTPFEDWFAAIQMGRAYPGYENVYSFNGTKLPKHNKTIFL QGLPGLNYLVAETNGTRPGDPRIPGKQQSVISFTKKQTPGINIPRGDGFPKKVIFNGEECALPKHIPTQSGGHKSVRLDMLTVMVAATAVAFGIMGDYGR LLHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10043065 [exp]	0	1
AT1G09510			NAD(P)-binding Rossmann-fold s...		Lus10023097 [exp]	2.6	0.8891
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	3.2	0.9195
					Lus10006359 [exp]	4.9	0.6875
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	4.9	0.9159
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	6.0	0.9159
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	6.9	0.9159
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040382 [exp]	7.5	0.7239
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	7.7	0.9159
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	8.5	0.8901
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	9.5	0.8779

Compare expression of checked genes

Lus10043065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.