Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27120 196 / 1e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011161 [exp] 339 / 9e-117 AT4G27120 279 / 8e-94 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G418900 [exp] 254 / 1e-83 AT4G27120 229 / 4e-74 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09756 [flax] [poplar] DDRGK DDRGK domain
Representative CDS sequence Show only first row Show all	>Lus10043066 pacid=23168029 polypeptide=Lus10043066 locus=Lus10043066.g ID=Lus10043066.BGIv1.0 annot-version=v1.0 ATGGAGGAACTATTCGTCGCCATTCTCTCTATGCTCCTCGTCGTCGGTCTGATTCCGCTGTACATATGGAAGCGCCGCCAAGATTCTGGATCACCCGATG AACAGCAAGAAGAGCCTCAGCATCCCGAGACCGTGGCGCGGGCAACTGGCGCTTCGCGGACTCGGATGCGGCGCAGACCTGTGACTGGAGCCAGTTCGTC TAGAGCCTCAGCAGATATTGATGAAGACAATGTGGATGAGGGTGACGATCCTGGTAAACCATCAAAGAAGAGGGAGAAGAAACGGCAAGAACGTGAAGCA CAAAGACAGGCCATTGAAGCTGCACGTGAGTCAAAGTCGACAAAACAAGATTATTATGCGGAAATGCGTAGGAAAAAGGACAAAGAGCATGAGGCGAAAG AGCGTATGCTGGAAAAAGAAGCCAAGGCTCGGAAAGCCAAGGAGGAGAAAGCTGCTGATTTAGAGTTTCATAAATGGAAAGGAGAGTTTTCAGTAGTTGA TGAAGGAACAATGGAGAATGAAGCTGAAGATGGAAATCAGAGTCTGCTATCTGGTTTCGTGGATTACATCAAGGTAGCAGAATTTTCCAGGCTCTTAAGT GCTGATCTCAGAAGGGATTCTGTGCTTTGCATCAAGTGTGCAAAATTATCCTTTGTCCTATCGTCTGCTGACACGTCCTCCATCTGGCAGAACCAAAAAT GTGTTCCTCTGGAAGATCTTGCTGGCGAATTTAAGATGCGTACTCAGGAGTGCATCAACCGAATCACCTCCTTGGAAAGCATGGGACGGCTTTCAGGTAT AATGGACGGCAGAGGAAAATACATATACATCTCGGTGGAAGAGATGAAGGCGGTGGCAGAATACATCAAGCGCGAAGGGAGGGTAAGCATATCACATTTG GCGAGGAAGTCAAACCAATTCGTTGATCTGGAACCTAAACCAGAGTTTGTCGAGGGAATAGCTGCTGCAACTTAA
AA sequence Show only first row Show all	>Lus10043066 pacid=23168029 polypeptide=Lus10043066 locus=Lus10043066.g ID=Lus10043066.BGIv1.0 annot-version=v1.0 MEELFVAILSMLLVVGLIPLYIWKRRQDSGSPDEQQEEPQHPETVARATGASRTRMRRRPVTGASSSRASADIDEDNVDEGDDPGKPSKKREKKRQEREA QRQAIEAARESKSTKQDYYAEMRRKKDKEHEAKERMLEKEAKARKAKEEKAADLEFHKWKGEFSVVDEGTMENEAEDGNQSLLSGFVDYIKVAEFSRLLS ADLRRDSVLCIKCAKLSFVLSSADTSSIWQNQKCVPLEDLAGEFKMRTQECINRITSLESMGRLSGIMDGRGKYIYISVEEMKAVAEYIKREGRVSISHL ARKSNQFVDLEPKPEFVEGIAAAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27120			unknown protein		Lus10043066 [exp]	0	1
AT5G63905			unknown protein		Lus10007744 [exp]	2.0	0.8113
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	2.4	0.8587
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10036897 [exp]	2.6	0.8040
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	3.7	0.8472
AT1G76200			unknown protein		Lus10012279 [exp]	7.3	0.8425
AT3G58130			N-acetylglucosaminylphosphatid...		Lus10034805 [exp]	12.0	0.8035
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	13.8	0.8087
AT3G08890			Protein of unknown function, D...		Lus10022674 [exp]	15.2	0.7916
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	17.0	0.7940
AT3G29130			unknown protein		Lus10023356 [exp]	17.7	0.7906

Compare expression of checked genes

Lus10043066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.