Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1157 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28380 1150 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28415 1144 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28360 1140 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28390 1090 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28860 932 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 901 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G10680 871 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G25960 867 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G02520 860 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035834 [exp] 1734 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 1373 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 1366 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 1148 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10036617 [exp] 1051 / 0 AT3G28345 764 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10012959 [exp] 992 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10023929 [exp] 932 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10030674 [exp] 909 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 907 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417600 [exp] 1715 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 1686 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 1173 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1156 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1150 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 1148 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 1070 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 934 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.002G019600 [exp] 927 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.016G093600 [exp] 915 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10043069 pacid=23168274 polypeptide=Lus10043069 locus=Lus10043069.g ID=Lus10043069.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAAGCTGGTATGTTTCGGTTTGCAGATGGCACAGACAAGTTGTTGATGATCGTCGGAGTTATAGGCAGCATCGGAGATGGGTTACAGTACC CACTTTCAACCTTCATTCTTAGCTTCGTGATGAATGACGTCGGAGTTATAGGCAGCATCGGAGATGGGTTACAGTACCCACTTTCAACCTTCATTCTTAG CTTCGTGATGAATGACTATGGCAGCCCCCCCCAGCCGTTAACAAAAGATGTTGTAGATAAGTATGCAGTCAAGCTTCTTTGTGTAGCTATCGCAGTTGGA TTGTCTGCTTTCATGGAAGGAGTATGTTGGACAAGAACTGCTGAAAGACAGACTTCCAGAATAAGAATGGAATATCTGAGGTCAGTCCTGAAACAAGAAG TTGGTTTCTTTGATACCCAAGATGGCGATTCATCAACAACATACCAAGTCGTCTCAACCATCTCCAACGATGCCAATTCAATCCAAGTTGCAATATGCGA CAAGATACCAAACTCCATTGCATACGGATCTGCCTTCATTGCATGCATTGTGGTCGCTTTCATGGTATCATGGAGACTTTCCCTGGCAGCTCTTCCTTTA ACACTACTATTTCTGGGGCCATGTTTGACATTCGGGAAGCTCATGACTGATGCACTGATGAAGAAGCTCGAAACTTATGGAGTTGCTGGAGGAATTGCGG AGCAAGCCATCTCTTCAATCAGAAGTGTGTATTCTTACGTTGCAGAGGAGGAAACGCTGGACAAATTCAGCCAAGCACTTGACAACACCTTGGCATTAGG CATCAAGCAAGGTCTTGCAAAGGGAATAATGATGGGTTCCATTGGTATTATTTACCTCGGTTGGGCATTTCAGTCTTGGTATGGAGCTTATTTGGTGACT GAAAAGGATGAAAAGGGTGGCTCCCTTTTTGTTGCTTCAGTCAATGTCATCATGGCCGGAATGAGTATGATGAGTGTATTGCCAAACCTAGCATCCATTG CTGAAGCAACTGAAGCTGCCAGTCGGATCGTTCAAATGATTGATCGATTTCCCGATATCGACTCGGAAGAGAAGAAAGGGAAAGCTCTGTCGCATGTGAG AGGAGAAGTTGTGTTTAAGGACATCCATTTCTGCTACCCTTCAAGGCCTGATACGCAAGTTCTGCGAGGACTCAATCTGACTATTCCAGCTGGTCAAACA GTTGGTCTTGTGGGTGGCAGTGGTTCTGGAAAGTCCACTATCATTTCATTACTTCAGAGATTTTACGATCCAATCGGTGGTGAAATACTCTTAGATGGGC ACGCAATCAAAAAGCTTCAGCTGAAATGGTTCAGATCACAGATGGGTTTGGTCAATCAAGAACCTGTCCTCTTTGCCACATCTATCAAAGAGAATATCTT GTTTGGAAAGGAAGGAGCCTCAACGGATGATATGATAAATGCAGCTAAGGCGGCAAATGCTCATGATTTCATAGTGAAGCTACCAGATGGATTTGATACT CAGGTTGGCCAATTCGGGTTCCAAATGTCTGGCGGGCAAAAGCAGAGAATCGCCATAGCAAGAGCTCTTATCAGAGAACCTAAAATCCTGCTTCTTGATG AAGCAACCAGTGCTCTTGATACACAATCTGAAAGAACAGTGCGGGATGCAATTGATCAAGCATCCAAAGGAAGAACCACGATCACCGTTGCTCACCGTCT CTCCACAATCAGAAATGCAAAACTAATTGTTGTCATACGAAGCGGGAGAGTAGTTGAAGCAGGTTCACATGAGGAGCTAACACAACAAACAAAGGATGGA GAATATTGCAGGATGCTTAACTTGCAGCTGACCATTGTACAAAAAAATGAAGATCATGATGATGATGTGGATGACTTTTTCAATGCAGAGGCGAAAAGTG TATCCAGAACATCTACGCCTGGCAGGCACAGTTGGAGGTTAACAGCTCCTAGTACCCCAACATCAAACCAATCAACACCAAGACGACACCGTTGGATGTC AACAGCTGCAGCCACACCATTGTCAAATCTTGCTAGTCCTGCATCAATAGGAACTCCATATTCCTACTCCGTAGAGTATGATGATATTTCGGACTCGAGC GATAAAGAAGAAGACTATGAAAGCTATTATTACCCTGCTCCTTCTCAGTGGAGGCTGCTGAAGATGAATGCTCCAGAATGGAAAGTTTCATTGATTGGAT GCGCGGCTGCCATATGCGGAGGAGCGTCCCAGACAATAAATGCTTATTTTGTCGGATTACTCGTGTCAACCCTCTTTGGCACTGATAAAGCTACTGTTAA GCACCAGTGCAGAACCCTGTCGTTCATTTTCCTTGGTCTTGCTGCATTCAACTTCACCACAAGTCTCCTCCAACACTACAGCTTTGCCGTGATGGGAGAG AAGCTGACCAAAAGAGTTCGGGAGAAGCTGCTAGGAAAGCTTCTAACTTTCGAGATTGGATGGTTCGATGAAGATGAGAACAACAGCGCAGCAGTTTGTG CAAGACTAGCCACAGAAGCTAACATGGTCCGATCCCTCGTTGGAGATCGAATATCTCTTTTGGTCCAAGCATTCTTTGGAACGCTAGCTGCGTACATACT AGCACTTGCTCTGTCGTGGAAGCTCGGTCTTGTCATGCTGGCTGTGCAGCCAGTGGTTGTGGGAAGCTATTACTCGAGGGCGGTTGTGACGAAAAGTATG GCTGGCAAAGCAAGAAAGGCACAGAAGGAAGGTAGCCAAATTGCTAGCGAAGCTGTGATCAACCACAGAACTATAACAGCATTCTCATCCCAGAAGAGAA TTCAAGCACTCTTCAGATCCACATTGAGAGGGCCAAAAGAGGAGAGTGTCGGACATTCTTGGTTGTCGGGTGTTGGGCTGTTCAGCTCCCAGTTTTTTAA CACGGCTTCCATTGCACTAGGTTACTGGTACGGAGGGAGACTTCTGGCAGATGGGGAGATAGAGGCAGTTCAACTCTTCCAGTCGTATTTGGCAATTGTG TTCTCCGGTTATGTTATAGCAGAAGCTGGAAGTATGACGAGTGATATATCGAAAGGAAGGACTGCTGTTAAAAATGTGTTCAAGATCATGGACAGGAAGA CTGAAATCGATCCTGATAGCTCCCGTGGAGTGATGTTGAAAAAGGAAATGAGGGGGAAAATAGAGCTAAAGGATGTTTACTTTGCTTATCCAACCAGACC TGACCAAATGATATTGAAGGATCTAAACCTGAAGATTGAACAAGGAAGGACGGTGGCACTTGTAGGTCCAAGTGGTTCGGGGAAATCCACCATCATTGGA CTGATCGAGAGATTTTACGACCCGTTGAGGGGTGCGATCTTCATTGATGGCAAGGACATAACTAGCTACAATTTAAGGTGGTTGAGATCCCATATTGGAC TTGTGAGTCAGGAGCCCAGCTTGTTTGCAGGAACCATCCGGGAGAACATTGCATATGGCAAGCAGGATGCACAAGAATCAGAGATTCAAAACGCCGCAAT CCAAGCAAATGCTCATGAATTTATAAGCGGAATGAAGGAAGGGTATGATACATACTGTGGAGAAAGAGGAGTTCAGCTATCTGGAGGGCAGAAACAGAGG GTGGCACTTGCTCGAGCTATACTGAAGAACTCATCAATCCTTTTGCTTGACGAGGCTACGAGCGCACTTGACAGCCAGTCGGAGAAGTTGGTCCAGGAAG CACTTGAGAAGATGTTGGTTGGCAGAACCTGTGTAGTGGTTGCTCACCGACTTTCGACCATCCAGAAATCAGATAGCATTGCGGTGATCAAGAATGGATT GGTTGCAGAGAAAGGGTCGCACAATGAGCTGATGTCGCTGGGCCAGAGAGGAGTTTATTACTCTCTCGTTAGACCACAACGACCTGGAACTCCAAGTGGC TCCCACTTTCGTCCCTGA
AA sequence Show only first row Show all	>Lus10043069 pacid=23168274 polypeptide=Lus10043069 locus=Lus10043069.g ID=Lus10043069.BGIv1.0 annot-version=v1.0 MEKKAGMFRFADGTDKLLMIVGVIGSIGDGLQYPLSTFILSFVMNDVGVIGSIGDGLQYPLSTFILSFVMNDYGSPPQPLTKDVVDKYAVKLLCVAIAVG LSAFMEGVCWTRTAERQTSRIRMEYLRSVLKQEVGFFDTQDGDSSTTYQVVSTISNDANSIQVAICDKIPNSIAYGSAFIACIVVAFMVSWRLSLAALPL TLLFLGPCLTFGKLMTDALMKKLETYGVAGGIAEQAISSIRSVYSYVAEEETLDKFSQALDNTLALGIKQGLAKGIMMGSIGIIYLGWAFQSWYGAYLVT EKDEKGGSLFVASVNVIMAGMSMMSVLPNLASIAEATEAASRIVQMIDRFPDIDSEEKKGKALSHVRGEVVFKDIHFCYPSRPDTQVLRGLNLTIPAGQT VGLVGGSGSGKSTIISLLQRFYDPIGGEILLDGHAIKKLQLKWFRSQMGLVNQEPVLFATSIKENILFGKEGASTDDMINAAKAANAHDFIVKLPDGFDT QVGQFGFQMSGGQKQRIAIARALIREPKILLLDEATSALDTQSERTVRDAIDQASKGRTTITVAHRLSTIRNAKLIVVIRSGRVVEAGSHEELTQQTKDG EYCRMLNLQLTIVQKNEDHDDDVDDFFNAEAKSVSRTSTPGRHSWRLTAPSTPTSNQSTPRRHRWMSTAAATPLSNLASPASIGTPYSYSVEYDDISDSS DKEEDYESYYYPAPSQWRLLKMNAPEWKVSLIGCAAAICGGASQTINAYFVGLLVSTLFGTDKATVKHQCRTLSFIFLGLAAFNFTTSLLQHYSFAVMGE KLTKRVREKLLGKLLTFEIGWFDEDENNSAAVCARLATEANMVRSLVGDRISLLVQAFFGTLAAYILALALSWKLGLVMLAVQPVVVGSYYSRAVVTKSM AGKARKAQKEGSQIASEAVINHRTITAFSSQKRIQALFRSTLRGPKEESVGHSWLSGVGLFSSQFFNTASIALGYWYGGRLLADGEIEAVQLFQSYLAIV FSGYVIAEAGSMTSDISKGRTAVKNVFKIMDRKTEIDPDSSRGVMLKKEMRGKIELKDVYFAYPTRPDQMILKDLNLKIEQGRTVALVGPSGSGKSTIIG LIERFYDPLRGAIFIDGKDITSYNLRWLRSHIGLVSQEPSLFAGTIRENIAYGKQDAQESEIQNAAIQANAHEFISGMKEGYDTYCGERGVQLSGGQKQR VALARAILKNSSILLLDEATSALDSQSEKLVQEALEKMLVGRTCVVVAHRLSTIQKSDSIAVIKNGLVAEKGSHNELMSLGQRGVYYSLVRPQRPGTPSG SHFRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28390		ABCB18, PGP18	ATP-binding cassette B18, P-gl...		Lus10043069 [exp]	0	1
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10038672 [exp]	6.1	0.6487
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10010207 [exp]	6.5	0.5860
					Lus10013650 [exp]	13.0	0.6376
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	16.9	0.6255
					Lus10022938 [exp]	24.9	0.6194
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	26.9	0.5563
					Lus10028109 [exp]	29.2	0.6290
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	33.7	0.5827
					Lus10024480 [exp]	34.9	0.5820
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	39.2	0.5767

Compare expression of checked genes

Lus10043069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.