Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04790 592 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21880 576 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 74 / 2e-13 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 65 / 2e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G18940 64 / 3e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52620 64 / 4e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 64 / 4e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G38730 62 / 1e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62720 61 / 2e-09 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 61 / 3e-09 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011164 [exp] 305 / 1e-95 AT4G04790 146 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042068 [exp] 71 / 3e-12 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013841 [exp] 68 / 4e-11 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 67 / 5e-11 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 67 / 8e-11 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 66 / 1e-10 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040648 [exp] 65 / 3e-10 AT4G18750 376 / 1e-119 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042081 [exp] 65 / 3e-10 AT5G50280 648 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 64 / 4e-10 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417400 [exp] 771 / 0 AT4G04790 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G133100 [exp] 446 / 2e-146 AT4G04790 380 / 5e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G109300 [exp] 73 / 6e-13 AT5G50990 616 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 66 / 8e-11 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 66 / 9e-11 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 66 / 9e-11 AT4G01400 576 / 0.0 unknown protein Potri.004G074500 [exp] 64 / 2e-10 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 63 / 6e-10 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 63 / 9e-10 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 61 / 3e-09 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10043070 pacid=23168207 polypeptide=Lus10043070 locus=Lus10043070.g ID=Lus10043070.BGIv1.0 annot-version=v1.0 ATGTCAAGAGGTAAGGCCCTTAGCTCCATCTTCCGCACCGCAATAACTGTAAAAAAACCGTCCGCTGTCTCAGAACGCGCAACTTCTATCCTCGAGACCA CCTCTACAGCCGCCGCCGCCTCTTCTCCTTCTACCAGCTCCCATGCTCTGGAACACTTGGTTTCCACCATCGGCGGCTTCTCCTCATCAACGTCTTCATC CTCATCCTCGGCAACCAAAAAGCGCTCAACTAAACTCCCAAATAAACGTTCCCTTAAAACAAAGCATCAGCGTTCTTCTTCTAGTCCCACGCTGCTGGAT CTCAAATTGGAAGCCTCGGACTCCGACTCATTTACAGATAACGCTTCAAAGCTGACGCAGGATCTAGCGGCCATTCTTTGTGATCAGAGTTCAGGTGTGT TACCTAATGCACAGGGAAGCAGCGATTCTGAGAAACCTTCAGAAAATGCATTGGATATATCTTGCTTCCTAAATTTAACCGGTAAAAGTTTACCCTCTCA GCGGAAAGACGTGAGTCGTGCAAGAAAAGAAAAATGGGTTTTTAGTTCTAGTCAGGTAAATCGCGTAGAGCGGATAGCTAGTTCTTGCGCAGAGAAGCTG GGATCAGATATGACTCTTCATGTATTTGGAAAATTGGGACGTGAAACCGGCGTTAAAGAGTATGATGCATTGATAAAGAGTTGCTTAAAGATAGCTAGGG GAACTAACGATTTGGAGATTATTTTGAAACACATATCCGGGTGCTTTCATTTTCTAACAGCGATGAAGGAACAAGGTTTCCAGATAGAAGAAAACACTTA TGGACCTGTGCTTATGTACCTAACCGAGAAGAGTATGGTAGAGGAATTTCATATGTTCTATGAAGCCATTAAAACTGAGAATCCGGGCTCTATTGCAAGA TTAGGTTACTATGAGATGCTGCTATATATTACAGTTGGTGATGAAGAAAAGATTCAAGAACTCTGCAGTTCAGTTTCTTCTGGTACTGAAACTGGAAGTC TCAAGATACATGAAAATTACTTAATAGCACTTTGTGAAAGTAACCGGAAGAATGACCTTTTGCCACTCCTGGACGTTATTGACGTAACAAAAATTCAGTC AATGGAGCACATGGCCAGTGTCTTTAGCACCTTTGGAAGGTTGTCACTGGGGTCTTTCGCTATTAAGTTCCTTTTGGCATTGAAAACTTGTGGTAGGTTC TGTTATCTCTTTCTTGTTAATAATGCTGAAGAGAAAATCTCGACTCTCATCTTTAGTTATGTCACTGGAATTCCAAATTTAGAGTTTGAGGATGTCATGT TAAAATTCAAAGAGCTGCACTCGGAGCTGGCTGCGAAACCTTCTATCGCTTCCTATGAAGAGCTCATTTCCTACTGCTGTGATGAACTTGAGGTTTATGC TGCTTTTGAGTTGGTCGACCAAATATATGAAGACCAAAGAGCCATATCCATGGACACATTTCATAAACTGCTCGATGCCATTGAGGAAAGCCGGGAGAAT ATTTTGGTAAGGAGGTTCTACCCGTTGATTGTTAATCATGACCTCCAACCAACTGCTGAGACATTCAAGAAAATGATAACTCTGAGTATGAGAACAGAAG ATTTCGATCTGGCTTATGGTATGCTTGAAGATATGAAGAAATGGACTTTAAAACCTACATCAAGCATGTATAATGCTATAATGGGAGCATATTTTCGGCA GAAACGTCCCAAATGTGCACTGAGGGTTTTGAAGCAAATGGAACTGGCGAATGTGGAACCGGATACTCAAACATACGGCTATTTGATAGGAAACTGTGAT AGTGAAGATGAAATTGTAAAGTATCACGAAAAGATGCAACTTGAGGGAGTCAAAGTCAACAAACACATTTCAATGGCATTGGTCAATGCATATGCAGCTT GTGGACAATTTGAGAAAGCAAAACAGGTAGTTTTAGACGAAACAGATGAGGCCCTCAGTGAAGTTAAAAGTGCTCTAATCTCTGTTCTGGCATGCAATGG ACAATATTCTGATGCCCTTGCCATATACAAGGAAACTAAGGCTGCTGTACGTGGAGTGACTCCTAAATCTGTCATCAGTCTAATTGAGTATTTCCCGTCC GATGGAGAGATAAATGAGTTACTTGAATTGTTGGAAGAAGTGCATGTTCAGGAGTATTGGGTGGATGCATGCTGTAGGGTTGTGCTGCATTGTATTCGCC GGAAGCATTTAAGTTGTCTTGCTGATCTGCTGAAACAAAAGGCGGAGAAAGTTTGCGACAATGAGATGGCTATGGAAGTGATTTTCGATGAGTTCTTTGC AAACATTGCTGACACGGAACCAGCAGATGTGGGGACGGGATTGAAGTTGCTAAATATCATAAAAACTGAACTCGGTCTTAGCCCTTCTCGAACAAGTCTT GATTATCTGTTATATATTTGTGCCAAGGCCAAGGACTTGCCCCATGCACGTTCAGTATGGAAAGAGTATGAAATAGCTCATCTCCCTTACAACGTCATTA GTTATTTGAGGATGTACCAAGTTCTTATGGCTTCAGGGGGGCGCACCGAGGCAAAAACCATACTAAAGAAAATCCCGAAAGAAGACCCTCATGTCCGGAT GATGATCAAAACATGGCAGAAAACTTACAGAGTTGCAACAGATTTGAAGTTAAGTGTGCAAGATCTTCTATTATATCTGGGAAGCTGA
AA sequence Show only first row Show all	>Lus10043070 pacid=23168207 polypeptide=Lus10043070 locus=Lus10043070.g ID=Lus10043070.BGIv1.0 annot-version=v1.0 MSRGKALSSIFRTAITVKKPSAVSERATSILETTSTAAAASSPSTSSHALEHLVSTIGGFSSSTSSSSSSATKKRSTKLPNKRSLKTKHQRSSSSPTLLD LKLEASDSDSFTDNASKLTQDLAAILCDQSSGVLPNAQGSSDSEKPSENALDISCFLNLTGKSLPSQRKDVSRARKEKWVFSSSQVNRVERIASSCAEKL GSDMTLHVFGKLGRETGVKEYDALIKSCLKIARGTNDLEIILKHISGCFHFLTAMKEQGFQIEENTYGPVLMYLTEKSMVEEFHMFYEAIKTENPGSIAR LGYYEMLLYITVGDEEKIQELCSSVSSGTETGSLKIHENYLIALCESNRKNDLLPLLDVIDVTKIQSMEHMASVFSTFGRLSLGSFAIKFLLALKTCGRF CYLFLVNNAEEKISTLIFSYVTGIPNLEFEDVMLKFKELHSELAAKPSIASYEELISYCCDELEVYAAFELVDQIYEDQRAISMDTFHKLLDAIEESREN ILVRRFYPLIVNHDLQPTAETFKKMITLSMRTEDFDLAYGMLEDMKKWTLKPTSSMYNAIMGAYFRQKRPKCALRVLKQMELANVEPDTQTYGYLIGNCD SEDEIVKYHEKMQLEGVKVNKHISMALVNAYAACGQFEKAKQVVLDETDEALSEVKSALISVLACNGQYSDALAIYKETKAAVRGVTPKSVISLIEYFPS DGEINELLELLEEVHVQEYWVDACCRVVLHCIRRKHLSCLADLLKQKAEKVCDNEMAMEVIFDEFFANIADTEPADVGTGLKLLNIIKTELGLSPSRTSL DYLLYICAKAKDLPHARSVWKEYEIAHLPYNVISYLRMYQVLMASGGRTEAKTILKKIPKEDPHVRMMIKTWQKTYRVATDLKLSVQDLLLYLGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	0	1
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	2.0	0.9419
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	2.0	0.9360
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	3.5	0.9286
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10008215 [exp]	4.9	0.9027
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	5.3	0.9191
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	6.0	0.9199
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	6.3	0.9251
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026920 [exp]	6.5	0.9091
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	6.9	0.9300
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	7.5	0.9046

Compare expression of checked genes

Lus10043070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.