Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20740 597 / 0 FIE1, FIS3, FIE FERTILIZATION-INDEPENDENT ENDOSPERM 1, FERTILIZATION-INDEPENDENT ENDOSPERM, Transducin/WD40 repeat-like superfamily protein (.1) AT1G79990 62 / 5e-10 structural molecules (.1.2.3.4.5) AT1G52360 61 / 9e-10 Coatomer, beta' subunit (.1.2) AT3G15980 60 / 1e-09 Coatomer, beta' subunit (.1.2.3.4.5) AT1G62020 58 / 5e-09 Coatomer, alpha subunit (.1) AT2G21390 58 / 6e-09 Coatomer, alpha subunit (.1) AT1G11160 55 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 53 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 53 / 3e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48630 51 / 5e-07 RACK1B_AT receptor for activated C kinase 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011165 [exp] 665 / 0 AT3G20740 526 / 0.0 FERTILIZATION-INDEPENDENT ENDOSPERM 1, FERTILIZATION-INDEPENDENT ENDOSPERM, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033092 [exp] 64 / 1e-10 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10002324 [exp] 62 / 2e-10 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10037525 [exp] 62 / 2e-10 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10011467 [exp] 61 / 1e-09 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 59 / 1e-09 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10011454 [exp] 57 / 2e-08 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10037538 [exp] 57 / 2e-08 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 57 / 2e-08 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417300 [exp] 698 / 0 AT3G20740 619 / 0.0 FERTILIZATION-INDEPENDENT ENDOSPERM 1, FERTILIZATION-INDEPENDENT ENDOSPERM, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G056300 [exp] 59 / 3e-09 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 58 / 4e-09 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 58 / 8e-09 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.012G074800 [exp] 57 / 2e-08 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 57 / 2e-08 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.010G255400 [exp] 53 / 2e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 51 / 9e-07 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.008G002300 [exp] 51 / 1e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G470900 [exp] 50 / 1e-06 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10043071 pacid=23168402 polypeptide=Lus10043071 locus=Lus10043071.g ID=Lus10043071.BGIv1.0 annot-version=v1.0 ATGGCGAGAATCACATTAGGATGCGAGCCAGTGGTCGGATCTCTCATTCCTTCTAAAAAAAGAGATTACAGGGTCACCAACCGCCTCCAAGAGGGCAAAC GTCCTCTTTACGCCGTTGTCTTCAACTTCATCGACTCTCGTTACTTCAACGTCTTCGCTACCGTCGGCGGCAACCGGGTGACTGTTTATCAATGTCTTGA AGGAGGTGTTATAGCTGTGTTACAGTCTTATGTCGACGAAGATAAGGACGAGTCTTTCTACACTGTGAGCTGGGCGTGCAATCGTGATGGATCCCCTTTT GTTGTGGCTGGCGGAATCAATGGGATAATACGTGTTATAGGTGCTGGGCAGGAGAAGATAGACAAGAGTTTTGTTGGTCACGGGGACTCTATAAATGAGA TCAGGACTCAGCCACTGAAACCTTCGCTTGTGGTATCGGCAAGTAAAGACGAGTCAGTTCGCCTGTGGAATGTTCATACTGGAGTTTGCGTCCTCATATT CGCTGGAGCCGGGGGTCATAGGAATGAAGTTTTAAGTGTGGACTTCCATCCATCAGACATCTATCGCATTGCAAGTTGTGGAATGGATAACACTGTGAAG ATTTGGTCAATGAAAGAGTTTTGGCCATCTGTTGAAAAATCGTTCACATGGACGGACCTTCCTTCAAAGTTCCCCACAAAATACGTGCAGTTTCCGGTAT TCATAGCTTCAATTCACTCAAACTACGTCGATTGTAATCGGTGGCTTGGCGACTTTGTCCTATCAAAGAGCGTAGACAATGAGATTGTGCTGTGGGAGCC AAAAACAAAGGATCAGTCACCTGGGGAGGGGACAGTTGACATCCTTCAAAAGTATCCTGTTCCTGAATGCGACATTTGGTTCATCAAGTTTTCATGTGAT TTTCACTTCAATGCAGCGGCTATAGGAAACAGAGAAAGGAAGATCTTTGTGTGGGAGTTGCAAACTAGTCCCCCGAGTCTCATAGCAAGGTTGTCTAACG TTCAATCCAAATCTCCAATCAGGCAGACTGCAATGTCATTTGATGGCAGCACTATTCTTAGCTGCTGCGAGGATGGAACAATATGGCGTTGGGATGCAAT ATCATCATCATCTTCGTCTTCATCTTCTCAAGTATAG
AA sequence Show only first row Show all	>Lus10043071 pacid=23168402 polypeptide=Lus10043071 locus=Lus10043071.g ID=Lus10043071.BGIv1.0 annot-version=v1.0 MARITLGCEPVVGSLIPSKKRDYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYVDEDKDESFYTVSWACNRDGSPF VVAGGINGIIRVIGAGQEKIDKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVHTGVCVLIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK IWSMKEFWPSVEKSFTWTDLPSKFPTKYVQFPVFIASIHSNYVDCNRWLGDFVLSKSVDNEIVLWEPKTKDQSPGEGTVDILQKYPVPECDIWFIKFSCD FHFNAAAIGNRERKIFVWELQTSPPSLIARLSNVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDAISSSSSSSSSQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10043071 [exp]	0	1
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034076 [exp]	4.7	0.8283
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	6.0	0.8158
AT3G45900			Ribonuclease P protein subunit...		Lus10033275 [exp]	11.7	0.7676
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	16.4	0.7869
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	20.1	0.7693
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	23.2	0.7379
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	24.2	0.7608
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10016835 [exp]	26.0	0.7282
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	32.7	0.7667
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031194 [exp]	36.3	0.6994

Compare expression of checked genes

Lus10043071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.