Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20720 1252 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011166 [exp] 2017 / 0 AT3G20720 1336 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132800 [exp] 1433 / 0 AT3G20720 1468 / 0.0 unknown protein Potri.001G417200 [exp] 1392 / 0 AT3G20720 1456 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043072 pacid=23168335 polypeptide=Lus10043072 locus=Lus10043072.g ID=Lus10043072.BGIv1.0 annot-version=v1.0 ATGGAAGCTATACTAGGCCGGGCTCTGGAGTACACTCTCAAGCACTGGCTCAATGTAAACTCCTCTGTTGTTTTAGATATCAATGGAGATGCTCTGCACG CTAGTATGGGACTCCCGCCAGCCATTACTGTCACCAAGGCCAAAGTCGCCAAATTTGAGATTATTCTTCCCTATGTGAGCAATGTGCAAACGGAGCCGAT TGTTGTGCAAATCGATAAGCTTGATCTGGTTTTCAAGGAGAACCGTGATTGGGATGCACCTACCAGTACTCAATGCCAAGGTTCCATTTCTTCTTCTCCT AGCACCACCAAAGTTAGTGGCGGTGGGTATGGTTTTGCTGATAAGATTGCTGATGGAATGACGATTAAGGTTACCACTGTGAATCTTTTACTTGAGACAC AGGGTGGTGCTGGTCGAGGGGGGGAAGCTGCTTGGGCTCCACCTATGGCGTCAATAACAATACGTAACCTTGTTTTGTATACCACAAATGAAAACTGGGA GGTTGTAAATCTCAAGGATGCACGTGACTTCTCCAATGACAAAGCTTACATATACATCTTCAAGAAACTGGAATGGGGATCTTTATCTATTGATCTTTTG CCCCATCCTGATATGTTCACCGAAGCGAATATAGAACGTTACCAGGAGAGAAAGAATCAGAGAGATGATGATGGTGCAAAGCGCGTTTTCTTTGGTGGAG AACGATTCCTAGAAGGGATATCCGGAGAAGCTTATATCACAGTGCAGCGAACTAACCAAAATGATCCTCTTGGTCTAGAGGTTCAACTGCATGTTACTGA AGCTGTTTGCCCTGCACTGAGTGAACCAGGACTTCGTGCCCTCCTCCGCTTCTTCACTGGTTTGTACGTGTGCCTTAACAGAGGGGATGTGGATCTGAAT GCTCAGCAGTCATCCACAGAAGCAGCAGGACGTTCTCTTGTCTCTATTGTTATCGACCACGTATTTCTCTCAATTAAAGATGCTGAGTTCCAGCTTGAAC TTCTGATGCAGTCACTCCACTTTTCAAGGGCAACAGTTTCTGATGGAGAAGTTGCCAAAAATTTGACTAAGATAATGATTGGAGGATTCTTCTTGAGAGA TACATTTTGTCGACCTCCTTGTACTCTAATACAACCATCCATGGTGGCTGTTGTTGATAGTGTTACACAGAGTCCTGCCTTTGGTATATCACTGGTTTCC ACCGTCACTCTTCTGCAGAATCAGTTGTCTATTTCCTCTAGGCTTAACGGTTGTTACAATTTTTTGACAGCTGTGAACTTCTGTCCTCCAATATGTCCTA TTAGAGAACAACAGTGGCAATTGATTGGGGATACTCCTTTGATTTCCCTCTATTCTCTTCAAGTCCAGCCTTCTCCAGTGCCTCCATCTTTTGCTTCTCA AACTCATATTGTCTGCTTGCCTCTCACCATTTACCTTCAAGAGGAATCATGTTTGAGAATATCTTCCTTCCTAGCTGATGGTATCGTTGTCAATCCTGGG GATGTCTTGCCTCAAATATCTGTGAACTCCATGAACTTCTCATTAAAGGAGTTAGATTTTACAGTCCCCTTAGAAATTAGTGATTCAAGCACTCACGGGA ATAATGGGAACTTTGGTAGTCAGGGTTCCTTCACTGGAGCAAGGCTTCACATTGAAAACTTGTTCTTCTCAGAGTCTCCTTCTCTAAAACTCAGGCTCTT GAGCCTTGAAAAGGATCCTGCATGCTTTTGTCTCTGGCCAGGTCAGCCAATTGATGCCAGCATGAAAAAATGGATGGCTGGAGCCTCATGCCTTAGTTTG TTTCTCGAAACATCTGAACCATTAAAATCTCCGGCACTTACTTCTGAGCTGTGGAGATGTGTTGAAATGAAAGATGCTTCAATTGAGGTGGCCATGGTGT CTGCTGATGGCAGCCCACTCACAAATATTCCTCCTCCGGGCGGGATTGTTAGGATAGGGGTAGCTTGTCAACAGTACATATCAAACACTTCTGTTGAGCA GTTGTTTTTCGTCCTGGATTTATATGCATACCTTGGAACAGTTGGTGAAAAGATTGCCTTAGTTGGCAAAGAGACTAAATCAAAGAGACATCAATATAAA TCCTCAAGTGCCAGGCTATTGGACAAGGTTCCAGCTGATACTGCAGTGAGCCTGACGGCAAATAGCCTTCAGCTCCGATTTTTGGAATCCTCTACTACGA AATCCGAGGGAAAGCCTCTTGTTCAGTTTGTCGGGGAAGATCTTTTTAGTAATGTCGTTCATAGAACCCTTGGTGGTGCTGTTGCTGTTTCATCAATTCT CAGGTGGCAGAGCATTGAGGTAGACTGTGTCCAAGCTGCAGACGTATCAACTTCAAGCTCTGTTGAGAATGGCAACTTTAAAGGTGCCAACGGGTACCCT GATCTTAGACCCGTCCTTTGGGTACATAAGGAGATCAAGCCGAAAACCAATGGGAATTCTTCTCTGGTACCTTTTATAAATGTGAGCGTGGAACATATGA TTCCATTCAGTGAAATGGATAGAGAGTGTCACAGTTTAGGTGTATCAGCCTGCATATATGGTCTCCGTCTTGGTGGAGGAATGAATTATGCTGAAACCTT GCTGCACCGTTTTGGGATACTTGGGCCTGATGGTGGTCCAGGGGAGGGACTGTCTAAAGGATTACAGAATTTATCAGCGGGACCACTATCAAAGCTTTTC AAAGCATCACCTCTGATTCCTAAGGACGTTGGAGAAGATGGAAGTTCGGGAAGTGGCAATGAAGGTGGATTGTTGCATCTTGGAATTCCAGATGATATTG ATGTGCGTATAGAATTCAAAGACTGGTTATTTGCTCTTGAAGGCCAGCAGGAAATAGGATATGGTTCGTCATATTTCAATCATGACAGCATAGGTAGAGA GCGGAGGAGTTGGCACGCTACTTTCCAAAGTTTCCTGGTGAAGGCAAAAAGTTGTTTGCAAAATGGAGGAAATTCAGACGTGCGGAAACATCCTATAGAT TTGGTCACGGTTGGTGTGGAAAGTTTACAGATACTGAAGCCACATTTACAAAAGCATACTACAGTATCTGAAAATGGGATCAAAGGAGTTGCCCGGTCAT CTGAAGGGCTCGATGTCGAGGTTCGCTTGGTGATGGCAGAAGAAGATGTCGATGATGTCTACGAAATGGACAAGTGGGAAATGGAGAATTTCAAGTTCTC TGTCAAGCAACCGATCGAGGTTGTTGTTAGTAAAGACGAGCTCCGACATCTAGGTTGTTTGTGTAAATCAGAGATCGATGCAATGGGTAGGATTACAGCA GGTGTCCTGAGGCTCCTGAAGCTGGAACACTCCATTGGTCCGGGAGCCATCTATCAGCTTAATAACCTTGGGAGCGAGCGACTTGACAAGATTTTCAGTC CAGAAAAGCTCAGCAGGGTTGGTATCCGTGGCGAAGGAAGTCAGGAGAAGAGGAGAGTTGAAGCAACAGTTAGTTTGGTGGAGGAAGCAGTTGCAGATTC GGAAGCCAAATGCGCTGCCATTATGACCAATTTGTCGAGCCCGGATGCATCGTTGCAGAATCTTGCCGATATTATGCAGGTATGTCAGAACCTTGAAAGC ATGAAGAGCTTGTTGACGCAATTACGAACTCGGATTTGA
AA sequence Show only first row Show all	>Lus10043072 pacid=23168335 polypeptide=Lus10043072 locus=Lus10043072.g ID=Lus10043072.BGIv1.0 annot-version=v1.0 MEAILGRALEYTLKHWLNVNSSVVLDINGDALHASMGLPPAITVTKAKVAKFEIILPYVSNVQTEPIVVQIDKLDLVFKENRDWDAPTSTQCQGSISSSP STTKVSGGGYGFADKIADGMTIKVTTVNLLLETQGGAGRGGEAAWAPPMASITIRNLVLYTTNENWEVVNLKDARDFSNDKAYIYIFKKLEWGSLSIDLL PHPDMFTEANIERYQERKNQRDDDGAKRVFFGGERFLEGISGEAYITVQRTNQNDPLGLEVQLHVTEAVCPALSEPGLRALLRFFTGLYVCLNRGDVDLN AQQSSTEAAGRSLVSIVIDHVFLSIKDAEFQLELLMQSLHFSRATVSDGEVAKNLTKIMIGGFFLRDTFCRPPCTLIQPSMVAVVDSVTQSPAFGISLVS TVTLLQNQLSISSRLNGCYNFLTAVNFCPPICPIREQQWQLIGDTPLISLYSLQVQPSPVPPSFASQTHIVCLPLTIYLQEESCLRISSFLADGIVVNPG DVLPQISVNSMNFSLKELDFTVPLEISDSSTHGNNGNFGSQGSFTGARLHIENLFFSESPSLKLRLLSLEKDPACFCLWPGQPIDASMKKWMAGASCLSL FLETSEPLKSPALTSELWRCVEMKDASIEVAMVSADGSPLTNIPPPGGIVRIGVACQQYISNTSVEQLFFVLDLYAYLGTVGEKIALVGKETKSKRHQYK SSSARLLDKVPADTAVSLTANSLQLRFLESSTTKSEGKPLVQFVGEDLFSNVVHRTLGGAVAVSSILRWQSIEVDCVQAADVSTSSSVENGNFKGANGYP DLRPVLWVHKEIKPKTNGNSSLVPFINVSVEHMIPFSEMDRECHSLGVSACIYGLRLGGGMNYAETLLHRFGILGPDGGPGEGLSKGLQNLSAGPLSKLF KASPLIPKDVGEDGSSGSGNEGGLLHLGIPDDIDVRIEFKDWLFALEGQQEIGYGSSYFNHDSIGRERRSWHATFQSFLVKAKSCLQNGGNSDVRKHPID LVTVGVESLQILKPHLQKHTTVSENGIKGVARSSEGLDVEVRLVMAEEDVDDVYEMDKWEMENFKFSVKQPIEVVVSKDELRHLGCLCKSEIDAMGRITA GVLRLLKLEHSIGPGAIYQLNNLGSERLDKIFSPEKLSRVGIRGEGSQEKRRVEATVSLVEEAVADSEAKCAAIMTNLSSPDASLQNLADIMQVCQNLES MKSLLTQLRTRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20720			unknown protein		Lus10043072 [exp]	0	1
AT3G20720			unknown protein		Lus10011166 [exp]	2.4	0.8750
AT5G27970			ARM repeat superfamily protein...		Lus10004115 [exp]	4.2	0.8640
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10011011 [exp]	5.3	0.8201
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	5.9	0.8607
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	6.7	0.8695
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	7.2	0.8804
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	10.1	0.8757
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10036628 [exp]	12.7	0.8259
AT3G04490			unknown protein		Lus10042566 [exp]	15.2	0.8279
AT2G01480			O-fucosyltransferase family pr...		Lus10034606 [exp]	16.5	0.8372

Compare expression of checked genes

Lus10043072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.