Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12740 461 / 4e-158 HhH-GPD base excision DNA repair family protein (.1) AT2G31450 59 / 3e-09 ATNTH1 DNA glycosylase superfamily protein (.1.2) AT1G05900 57 / 9e-09 ATNTH2 endonuclease III 2 (.1.2) AT3G10010 50 / 4e-06 DML2 demeter-like 2 (.1) AT2G36490 49 / 1e-05 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT5G04560 45 / 0.0001 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT4G34060 43 / 0.0006 DML3 demeter-like protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001182 [exp] 850 / 0 AT4G12740 464 / 2e-158 HhH-GPD base excision DNA repair family protein (.1) Lus10027037 [exp] 55 / 7e-08 AT2G31450 416 / 3e-145 DNA glycosylase superfamily protein (.1.2) Lus10025575 [exp] 54 / 1e-07 AT2G31450 424 / 1e-147 DNA glycosylase superfamily protein (.1.2) Lus10035576 [exp] 49 / 9e-06 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10027713 [exp] 49 / 1e-05 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10023864 [exp] 48 / 2e-05 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G198000 [exp] 587 / 0 AT4G12740 523 / 0.0 HhH-GPD base excision DNA repair family protein (.1) Potri.007G127600 [exp] 58 / 5e-09 AT2G31450 421 / 3e-147 DNA glycosylase superfamily protein (.1.2) Potri.006G116000 [exp] 48 / 1e-05 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.001G150001 [exp] 47 / 2e-05 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.010G234400 [exp] 44 / 0.0002 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.008G025900 [exp] 44 / 0.0002 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Lus10043074 pacid=23167981 polypeptide=Lus10043074 locus=Lus10043074.g ID=Lus10043074.BGIv1.0 annot-version=v1.0 ATGGAAGACTCCGTAACCGCAAGTAAGATGCAGGGAGGCGGGAGAAACGGTCGGCCGAAGAGGAATAGCAAACAACTCCCTACTGACAAAGTTGGAGTAG AAGTAGCAGCTGATATCGAAGACCTATTTAGTGAAAAAGAAACCCAGAAAATCAGGGCTTCCATGCTGAAATGGTACGACGGTAACCAGAGGGAGCTTCC ATGGAGAAGAAGGAAAGAAGACGGTAGCCCAACTGAAGAAGGTGGTAAGGAGGAGAAAGAGAAGAGGGCTTATGGGGTTTGGGTTTCAGAGGTGATGCTG CAGCAAACCAGAGTTCAGACTGTTATTGATTACTATAATCGGTGGATAGCCAAGTGGCCTACAGTTGAGCTTCTTTCTCAGGCTTCCCTGGAGGAGGTTA ACGAGATGTGGGCTGGACTAGGTTACTATAGACGGGCACGGTTCCTACTGGAGGGAGCCAAGATGATAGTTGATGAGGGAGATGGATTTCCCAGCACAGT TGGTTCCCTGAGAAAGGTTCCAGGAATAGGGAACTACACTGCTGGTGCTATCGCCTCCATAGCATTCCAACAAGTTGTGCCTTTAGTTGATGGGAACGTA ATAAGGGTGCTTGCTAGGTTGAAAGCTATCTCTGCAAATCCTAAAGACACAGCAACATGTTTACTTATTATTGAGATGCAAGTTTGGACCAGGAAGCTAG CAGCTCAACTAGTAGATGCTGCTCGTCCTGGGGACTTCAACCAGTCTCTCATGGAACTCGGTGCAACTCTATGCACTCCTTTGAATCCAAACTGCTCTTC TTGTCCTGTTTCTGGTCAATGTCGTGCCCTTGTGAGCTCGAGGAAGGATCAGTCGGTAATGGTGATAGATTATCCAGCAAAGGTCGTGAAAGCAAAACAA AGAGAGGAGTATTCTGCTGTGTGTGTTGTGGAGATATTAGGAGGCAAGGATCCAACTGATAATCTATTTCTTCTTGTGAGGAGGCCAGATGAAGGCTTGC TTGCTGGTCTTTGGGAGTTTCCATCTGTATTGATGAAGACAGAAGCTGACTTGATAAGGCGGAGAAAAGTCATGGATAGCTCTCTGAGGAAATCATTTGG GCTCGATCCGAAAAGGAGTCATTCAGTCATTAAGAGGGAGGATGTTGGAGAATTTGTTCATATTTTCAGTCACATCCGTCTGAAGATTTACGTTGAGTTG TTAGCTATACAGCTTAAAGGTGAAATATCTGATATATTCTCTGAGCAAAACATGGGAAAAGCAACTTGGAAGTGTGTCGCTGGCAAGGATCTTCCAACCT TGGGATTGACATCTGGAGTGAAGAAGGTAACAAGTAATTAG
AA sequence Show only first row Show all	>Lus10043074 pacid=23167981 polypeptide=Lus10043074 locus=Lus10043074.g ID=Lus10043074.BGIv1.0 annot-version=v1.0 MEDSVTASKMQGGGRNGRPKRNSKQLPTDKVGVEVAADIEDLFSEKETQKIRASMLKWYDGNQRELPWRRRKEDGSPTEEGGKEEKEKRAYGVWVSEVML QQTRVQTVIDYYNRWIAKWPTVELLSQASLEEVNEMWAGLGYYRRARFLLEGAKMIVDEGDGFPSTVGSLRKVPGIGNYTAGAIASIAFQQVVPLVDGNV IRVLARLKAISANPKDTATCLLIIEMQVWTRKLAAQLVDAARPGDFNQSLMELGATLCTPLNPNCSSCPVSGQCRALVSSRKDQSVMVIDYPAKVVKAKQ REEYSAVCVVEILGGKDPTDNLFLLVRRPDEGLLAGLWEFPSVLMKTEADLIRRRKVMDSSLRKSFGLDPKRSHSVIKREDVGEFVHIFSHIRLKIYVEL LAIQLKGEISDIFSEQNMGKATWKCVAGKDLPTLGLTSGVKKVTSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	0	1
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10018612 [exp]	3.2	0.9006
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Lus10039536 [exp]	3.3	0.8804
AT1G76405			unknown protein		Lus10016039 [exp]	4.2	0.8818
AT1G09050			unknown protein		Lus10037506 [exp]	4.9	0.8980
AT1G71840			transducin family protein / WD...		Lus10032994 [exp]	5.1	0.8670
AT2G34050			unknown protein		Lus10013954 [exp]	5.1	0.8766
AT4G31150			endonuclease V family protein ...		Lus10000685 [exp]	6.3	0.8820
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	7.4	0.8878
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	8.8	0.8825
AT5G10070			RNase L inhibitor protein-rela...		Lus10003856 [exp]	8.9	0.8806

Compare expression of checked genes

Lus10043074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.