Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20870 624 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 556 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 550 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 479 / 5e-166 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 466 / 2e-161 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 462 / 7e-160 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 455 / 5e-157 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 453 / 4e-156 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 445 / 7e-153 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 431 / 2e-147 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001183 [exp] 983 / 0 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 568 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 566 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 501 / 8e-175 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031098 [exp] 475 / 1e-164 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002633 [exp] 469 / 2e-162 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 466 / 3e-161 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10006811 [exp] 451 / 4e-155 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039095 [exp] 444 / 2e-152 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216700 [exp] 698 / 0 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 566 / 0 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 560 / 0 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 544 / 0 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 533 / 0 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 509 / 3e-178 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 473 / 6e-164 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.013G059700 [exp] 466 / 2e-161 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 461 / 3e-159 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 442 / 7e-152 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10043075 pacid=23168418 polypeptide=Lus10043075 locus=Lus10043075.g ID=Lus10043075.BGIv1.0 annot-version=v1.0 ATGGCCAGTCATGGAAACAAATCGGGTATGATATTTTTGGTGGTGTGGCTGATTAGTGTTGAAGGTGGGAAGACAGCAGCAGCAGCAGCAGGGCTAGCTG CCAACTGGGGTACACAATCCACACACCCATTGCCTGGAGACATAGTGGTTAAGCTTTTGAAGGAGAATGGGTTTGATAAGGTGAAATTGTTTGAGGCTGA CCAAGCTGCATTGAAGGCGTTAGGCAACTCTGGTATCCAAGTCATGGTTGGGATACCAAATGACCTACTTGCACCTCTTTCCTCCTCTGTTCAGGCTGCT ATTGATTGGGTTCAGCAGAATGTCTCCAACTACATTTCCAAAGATGGGGTCAATATCAGACATGTAGCCGTGGGGAATGAGCCATTTCTAAAGACGTACA ACGACAGATTCGTACAAACAACATTCCCAGCTCTGAAGAATATCCAAGCTGCTCTGATAAAAGCAGGGTTAGGAAGACAAGTAAAAGTCACTGTGCCACT GAACGCAGATGTGTACCAGAGTGACAACGGCCTTCCCTCTGGCGGAAGTTTCAGACCAGACATCCATGACCTGATGATCTCCATTATCAAGTTCCTTAAC GAAAACAATTGTCCCCTCACCTTCAACATTTACCCATTCCTCAGCCTCTACGCCGATCCACACTTCCCCAAGGAGTATGCCTACTTTGATGGCAAAGCTG ATCCGCTTGTGGATGGTTCAATCTCCTACACAAACGTGTTTGATGCCAACTTCGACACCCTCGTTGCAGCTCTTGAGAAGAGTGGGTTCCCTTCCATGCC AGTGATTGTCGGGGAGGTTGGCTGGCCGACTGATGGGGACTCCAATGCCAACGTTGAAAATGCTAAGAGGTTTAACCAGGGACTAATAGATCGCATACTA CAGGGTCATGGCACACCAAGGAGATCCACTCCGCCTGACGTCTACATCTTCTCCTTGATCGATGAAGATCACAAGAGCATTGATCCAGGGAACTTCGAGC GACATTGGGGGGTTTTCAATTACGATGGTTCCATCAAGTACCAGCTCAACATGGGGGGTAATGGTGGCAAGGGTTTGGTTCCTGCCAAAGGGGTAAGGTA TCTGAAACGCCAGTGGTGTGTGTTGTCTCCTCAAGCCAACGTTGCTGACCCTGCTACTTTGGATAGCAGCATCAACTACGCTTGCACCTATGCAGATTGT ACTAGTTTGGGAGCTGGATCTTCCTGTGGAACCTTGGATGGTAGCGGCAATGCTTCTTATGCGTTTAACATGTATTACCAGACCATGAACCAAAGGAAGG GCGCATGTAATTTCAGCAATGGCCTTTCTCTGGTTACCACCCTTGATCCCACTGTCGGTAAGTGTCGATTCGAGGTTATGATCGATACCGGTAAACATCA ACTACCACCTCCTACACATTCTTCTTCATCAAAACCTGGAAACATTGAGTATGTAATCAGTGTAGTGGTAGGCTTCATGTTCATTCTTTACGGAGCAAGC TGA
AA sequence Show only first row Show all	>Lus10043075 pacid=23168418 polypeptide=Lus10043075 locus=Lus10043075.g ID=Lus10043075.BGIv1.0 annot-version=v1.0 MASHGNKSGMIFLVVWLISVEGGKTAAAAAGLAANWGTQSTHPLPGDIVVKLLKENGFDKVKLFEADQAALKALGNSGIQVMVGIPNDLLAPLSSSVQAA IDWVQQNVSNYISKDGVNIRHVAVGNEPFLKTYNDRFVQTTFPALKNIQAALIKAGLGRQVKVTVPLNADVYQSDNGLPSGGSFRPDIHDLMISIIKFLN ENNCPLTFNIYPFLSLYADPHFPKEYAYFDGKADPLVDGSISYTNVFDANFDTLVAALEKSGFPSMPVIVGEVGWPTDGDSNANVENAKRFNQGLIDRIL QGHGTPRRSTPPDVYIFSLIDEDHKSIDPGNFERHWGVFNYDGSIKYQLNMGGNGGKGLVPAKGVRYLKRQWCVLSPQANVADPATLDSSINYACTYADC TSLGAGSSCGTLDGSGNASYAFNMYYQTMNQRKGACNFSNGLSLVTTLDPTVGKCRFEVMIDTGKHQLPPPTHSSSSKPGNIEYVISVVVGFMFILYGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	0	1
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	1.0	0.9732
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	1.7	0.9670
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	2.0	0.9703
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	3.2	0.9627
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	4.0	0.9642
AT5G24620			Pathogenesis-related thaumatin...		Lus10015591 [exp]	4.2	0.9613
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	5.9	0.9558
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	6.9	0.9462
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	7.4	0.9465
AT1G75260			oxidoreductases, acting on NAD...		Lus10010832 [exp]	8.0	0.9529

Compare expression of checked genes

Lus10043075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.