Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54650 570 / 0 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 466 / 1e-151 AFH3 formin 3 (.1.2) AT5G67470 374 / 2e-115 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 354 / 2e-106 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT3G05470 346 / 5e-105 Actin-binding FH2 (formin homology 2) family protein (.1) AT2G43800 342 / 3e-103 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 270 / 6e-78 ATFH8 formin 8 (.1) AT1G59910 265 / 6e-75 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 224 / 1e-61 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 199 / 1e-53 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011168 [exp] 819 / 0 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10036609 [exp] 655 / 0 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10035827 [exp] 646 / 0 AT5G54650 586 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031585 [exp] 492 / 1e-160 AT4G15200 553 / 0.0 formin 3 (.1.2) Lus10039705 [exp] 478 / 7e-155 AT5G54650 496 / 1e-163 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10015091 [exp] 491 / 6e-154 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018494 [exp] 422 / 1e-134 AT5G54650 464 / 6e-151 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10025195 [exp] 372 / 3e-114 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 370 / 8e-113 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131700 [exp] 637 / 0 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 637 / 0 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 536 / 5e-177 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 379 / 8e-117 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 366 / 8e-112 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 358 / 8e-109 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.017G009900 [exp] 356 / 5e-108 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 359 / 8e-108 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 355 / 2e-106 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 348 / 3e-105 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10043077 pacid=23168194 polypeptide=Lus10043077 locus=Lus10043077.g ID=Lus10043077.BGIv1.0 annot-version=v1.0 ATGCGGATTCAGCAGCTAATAATTCAGGTGAATTCAAGGTTTTTATTACTTCTTCCCTTCCTGCTATGCGTTTCCGCCGTGCGGAGCTTCCAACACAGAG AGGCTGCAGAGGTATTACTCCTCGCCAAATTGTTCAACCCGGTTACAGAGGAGGTGGATGAGACTGTGGCTGAACTGCTATGGGACAATTGTAAGCTAGA TTTGAAGGAAGTAGATGAAGATCTCAACTTTTGTTTCCTGGAGGAAACATCTGGGAATCCCAGTATGTTTAAACCAAAGGGCTGGTCATTGTCAAAACAA AATATGCAGCAACTGTTCAAAGCTCCACACCCACGAATGAGGCAAACTCTTTTAGATTGTATAAGAAAGAATGATCTTGTATATGCTGTCTATGGTGAGG AACGTGGCTCTATTTTTACGAAGTCTTCAGTTCCTCCTAGGACATTGCGAGAAAGCAGTGCAAATCCACCAACACATGCGTCTCTTTCTGGTGTGAAGCC AACTTCAAGGAAAATTCATCAAGCAACCGAGGAAAGCGAGGCTTCTGAAATTGAAGAGGAGGTCGAAGGAAGCAGTGAGGATACCAAAATTATTATTGCA GTAGTTGTGACTGCGGTGACAACATCCATTTTGGCAGCTCTTTTTTTCTTCTGCTGTTTGAGAGTTCTTGGAACGGGCACTGGAGATGGGCTAAACGATG ACAAGCCACTTCTTAGTCTCAGCCTAAGCAACTCTACTAACTCTTCATACAAGTCTTTCAGTTTAGGAGGTTCTTTCACAGAAGACAAGCTTGATTCTCT ATCACTAGCCAGTAATTCAGGCCATCACAGAAAGAATTCATCTATTGATGGAAACATCCTCTCTGATGATGTTATCCTTGCCTCATTGGATGGCAATGGC GTTGCCACTACATCTTCATCTCAATCTGTTGATACTGGTTTGTTACCACCTCCCCCAGGAAGGAATCCTGGTTTGCCTCCCCTGAAGCCTCCTCCTGGGA GGGCAATTCCTCTTCCACCCGAACCGCCAGCTCCTTGTAGGCCTCCTAACAAACCTGCACCACCGCCACCACCTGCACCACCTAAGCCGCCACCTTCAAA AGCTTCTGCCAGTGCTCCACCTGCTGGACCACCACCTCCACCACCTCCTGCCCCTCGTGGAAAATCAGGCGCGCCGCCCCCTCCAGGGCCACCCCCTCCG GGGCCTCCTCCACCAAGGGGTGGTCCCGGTCCTCCTCCACCAAGGGGTGGTCCCGGTCCTCCTCGTGGACCACCACCGTTGGGTTCGAAAGTTCCTAGAG CTCCTGGTATGAGGGGTCCGGACGGAGATGATAGTAAAGCCAAGCTTAAGCCTTTCTTCTGGGACAAAGTTCTTGCCAATCCTGATCAGTCAATGGTCTG GCATCAGATTAAAGCAGGATCTTTCCAGTTCAACGAGGAGATGATAGAAAATCTATTTGGATATACACAACCTGAAAAAAGTAAAGTCGATAGGAAAAGA CAACCTTCACAAGAAAATATTCCACAGTTCGTTCAGATTTTGGATCCCAAAAAGGCTCAAAATTTATCGATTCTACTTCGTGCTTTGAATGTTACTACCG AAGAAGTTTCTGATGCCTTGCTTGAAGTGTTTTGGTCTGCCTTGGGTAAATCAGGAAATGAGCTTCCTGCTGAACTTATTCAGACTTTGTTGAAGATGGC ACCAACGTCAGACGAGGAACTGAAACTTAGGCTGTACAGCGGTGAACTTTCGCAGCTGGGACCTGCTGAGCGGTTCCTCAAGGCATTGGTTGATATTCCC TTTCCTTTTCATCGAATGGAAGCACTGCTTTTCATGGGCACGCTAGAGGAAGAGATTGCCAACGCCATGGATTCCTTCCACACGTTAGAGGTTGCGTCTA AAGAACTCAGGAACAGCAGGTTGTTCCTCAAGCTTCTAGAAGCTGTACTGAAAACTGGAAACCGAATGAACGACGGCACATTTCGTGGAGGAGCATCGGC ATTCAAGCTCGACACTCTTCTGAAATTAGCAGATGTCAAGGGGGTTGATGGAAAGACCACACTCTTGCATTTCGTGGTTCAAGAGATAGTTCGTTCGGAA GGAGTGAGGGCTGCCCGTGCAAGGAGAGATAGTAGGAGTTTCTCTAACGTGAGTGTCAAGACAGAAGATCTTCTCGATGAGATTTCTCCGGACAACGAAG ACCACTACCGAGCCCTCGGTCTTCAAGTGGTCTCTCGGTTGAGCAGCGAACTGGACAATGTCAAGAAAGCAGCGGCTATAGATGCTGACAACTTGACAGG AACTGTTGCTAAACTTGGCCATGCGCAGCTGAAAACTCGAGACTTTTTGAATAAAGAAATGAAGGATATAGATGAAGACAGCGGGTTTCATGAAGTGCTG AAGAGCTTTGTACAGAGTTCGGAGGGCGAGGTTGTGTCCCTGCTCGAGGAAGAAAAGAGGATTACTGTGCTGGTGAAGAGCACTGGCGATTATTTCCATG GAAACTCGGGAAGGGATGAAGGGTTGCGTTTGTTTACCATCGTAAGGGACTTCTTAGTGATCTTGGACAAGGTGTGCAAAGAGGTTGCGGAAGCACAGAA GAAATCGGCCAAAACGCTTAAGAAAGAGGCTTCCACTGCATCGTCGAACTCGAACTCAACTAATACACATAGCCAGCCTCCTCCTCCAACTGATCCTCGT TCGAAACTGATGCCTGCAATTGCAGAGAGAAGGGTGCAGGATTCAAGCTCTAGCTCAGACAGTTCTGACGATTAG
AA sequence Show only first row Show all	>Lus10043077 pacid=23168194 polypeptide=Lus10043077 locus=Lus10043077.g ID=Lus10043077.BGIv1.0 annot-version=v1.0 MRIQQLIIQVNSRFLLLLPFLLCVSAVRSFQHREAAEVLLLAKLFNPVTEEVDETVAELLWDNCKLDLKEVDEDLNFCFLEETSGNPSMFKPKGWSLSKQ NMQQLFKAPHPRMRQTLLDCIRKNDLVYAVYGEERGSIFTKSSVPPRTLRESSANPPTHASLSGVKPTSRKIHQATEESEASEIEEEVEGSSEDTKIIIA VVVTAVTTSILAALFFFCCLRVLGTGTGDGLNDDKPLLSLSLSNSTNSSYKSFSLGGSFTEDKLDSLSLASNSGHHRKNSSIDGNILSDDVILASLDGNG VATTSSSQSVDTGLLPPPPGRNPGLPPLKPPPGRAIPLPPEPPAPCRPPNKPAPPPPPAPPKPPPSKASASAPPAGPPPPPPPAPRGKSGAPPPPGPPPP GPPPPRGGPGPPPPRGGPGPPRGPPPLGSKVPRAPGMRGPDGDDSKAKLKPFFWDKVLANPDQSMVWHQIKAGSFQFNEEMIENLFGYTQPEKSKVDRKR QPSQENIPQFVQILDPKKAQNLSILLRALNVTTEEVSDALLEVFWSALGKSGNELPAELIQTLLKMAPTSDEELKLRLYSGELSQLGPAERFLKALVDIP FPFHRMEALLFMGTLEEEIANAMDSFHTLEVASKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGASAFKLDTLLKLADVKGVDGKTTLLHFVVQEIVRSE GVRAARARRDSRSFSNVSVKTEDLLDEISPDNEDHYRALGLQVVSRLSSELDNVKKAAAIDADNLTGTVAKLGHAQLKTRDFLNKEMKDIDEDSGFHEVL KSFVQSSEGEVVSLLEEEKRITVLVKSTGDYFHGNSGRDEGLRLFTIVRDFLVILDKVCKEVAEAQKKSAKTLKKEASTASSNSNSTNTHSQPPPPTDPR SKLMPAIAERRVQDSSSSSDSSDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10043077 [exp]	0	1
AT3G52270			Transcription initiation facto...		Lus10023502 [exp]	3.9	0.8578
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005892 [exp]	16.3	0.8761
AT4G22320			unknown protein		Lus10043179 [exp]	22.1	0.8519
AT2G41830			Uncharacterized protein (.1)		Lus10019717 [exp]	23.1	0.7801
AT3G27360			Histone superfamily protein (....		Lus10013948 [exp]	23.9	0.8737
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	26.3	0.8709
AT5G43120			ARM-repeat/Tetratricopeptide r...		Lus10024789 [exp]	27.3	0.8653
AT2G20515			unknown protein		Lus10024890 [exp]	51.4	0.8446
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	51.6	0.8220
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	59.0	0.8438

Compare expression of checked genes

Lus10043077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.