Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14910 662 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011169 [exp] 897 / 0 AT3G14910 681 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390700 [exp] 705 / 0 AT3G14910 673 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043078 pacid=23168263 polypeptide=Lus10043078 locus=Lus10043078.g ID=Lus10043078.BGIv1.0 annot-version=v1.0 ATGTCGAGGCGGAGTCACACCAGAGAATTGGGGTGCATATCGTGCAGTGAGCTGGAAGATCTAGGCTCCGGAAAGGAAGGTTGGCTGGTGGACAATCCTT ACCTCCTCTGCGCACTAGACACGCAGTCCCTCGCCCTCGCCAATAAGTATCTGGTGGTGATTACAGGATGGGACACTGGCCCTCGTTTCAAGATCCGGCC GGAACTGTCCCCGATCGAGTCGGAGCATATTACTGCTCTGGAGTGGTTGTCGTTCGATGAGATACGGGCGATTGCCGTGGGAACTTCTTGCGGGTACTTG CTGGTTTATTCTCTGGATGGGCAGTTGATTCATCGACAGTTTGTCTACTCGGCGCGAATTTTGAAACTAAGGGTCCGGGGTACTAAGAAAGATATGATGA GTGATACATCCCCTGCAGAGGAGGGTTCTGTCGTTTTAACTGGCGTTATTGCTCGTTTCGATGGAACTGTTATTCAGAACTTACTTGGAGATTGGTTTCA AGACGTGAATTCCCGGTTTTGGGATGAAAATCCAAGAAAGAAAGAACTAGAAGACCCTGGTAACTCTCACAAGAGTTTGCCTTATCAACTATGGAGTGTT AGCAAGCACGGATTGTGTATCGACGCAGCAATTACTGGTGTTATGCCACCTCCCCTGCTTGAAGTTCAGTCAAGTCAACGTTACTTTTGTGCAGTCACTG TGGGCGAGGATGCAGTAATCTCTGCTTACAGACTTTCAGAAGACAGAAGCCGGTCTTTAGTTGGTGCTATTCTGTCGAAAGTTGTTCCTGCAACGTTCTC AACTATTGCTTCTTTTTCTAAAATGATTTGGCGGAGCGAACAATCATCACCGAAAAAGACAGAACCCAAACCGCAGTCATTTGCTAAAGCATCTGTTGTG ACTTGGTTGAAAGATAAACCAAGGAAAGGGGAGAAATTAACATTGTCGCCCAGTGGTACGTTGGCAGCGATTACAGACTCTCTTGGCCGTATATTGCTTT TAGACACTCAGGCCCTAGTAGTGGTCCGACTATGGAAGGGATATCGTGATGCGAGGTGTTTGTTCATTGAAATGCTGGTTAATAAGGATAAAATAGGATC AAGTTCATCGTATTTTCAACCCGTGAAGAGTGATTATTGCCTCTGTCTAGCTATTCATGCACCACGGAAAGGAATCGTTGAGGTGTGGCAGATGAGAAGC GGAGAGCGTATTCTGGCAGTACAATGTGGGAAGGGGAGTAAAATATTGCAACCAACGTACAGGTTTGGATCGGTAATGGACTCTTCTTCTCCTTACGTTC CCCTGGAAGTGTTCTTGTTAGATGGAGAATCTGGTCAATTGTCAGTATTGAATCGCTCACTTCCCTGA
AA sequence Show only first row Show all	>Lus10043078 pacid=23168263 polypeptide=Lus10043078 locus=Lus10043078.g ID=Lus10043078.BGIv1.0 annot-version=v1.0 MSRRSHTRELGCISCSELEDLGSGKEGWLVDNPYLLCALDTQSLALANKYLVVITGWDTGPRFKIRPELSPIESEHITALEWLSFDEIRAIAVGTSCGYL LVYSLDGQLIHRQFVYSARILKLRVRGTKKDMMSDTSPAEEGSVVLTGVIARFDGTVIQNLLGDWFQDVNSRFWDENPRKKELEDPGNSHKSLPYQLWSV SKHGLCIDAAITGVMPPPLLEVQSSQRYFCAVTVGEDAVISAYRLSEDRSRSLVGAILSKVVPATFSTIASFSKMIWRSEQSSPKKTEPKPQSFAKASVV TWLKDKPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDARCLFIEMLVNKDKIGSSSSYFQPVKSDYCLCLAIHAPRKGIVEVWQMRS GERILAVQCGKGSKILQPTYRFGSVMDSSSPYVPLEVFLLDGESGQLSVLNRSLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14910			unknown protein		Lus10043078 [exp]	0	1
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	1.4	0.9364
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	2.8	0.9264
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	3.0	0.9279
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027698 [exp]	4.5	0.8996
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	4.5	0.9238
AT2G32970			unknown protein		Lus10035309 [exp]	4.6	0.9111
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	5.1	0.9320
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	6.3	0.9105
AT5G01010			unknown protein		Lus10042743 [exp]	6.9	0.9121
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	9.4	0.8991

Compare expression of checked genes

Lus10043078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.