Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14930 609 / 0 HEME1 Uroporphyrinogen decarboxylase (.1.2.3) AT2G40490 397 / 7e-136 HEME2 Uroporphyrinogen decarboxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011170 [exp] 821 / 0 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Lus10030544 [exp] 397 / 1e-135 AT2G40490 619 / 0.0 Uroporphyrinogen decarboxylase (.1) Lus10012892 [exp] 396 / 2e-135 AT2G40490 621 / 0.0 Uroporphyrinogen decarboxylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390800 [exp] 642 / 0 AT3G14930 627 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Potri.011G109800 [exp] 410 / 6e-143 AT3G14930 386 / 2e-134 Uroporphyrinogen decarboxylase (.1.2.3) Potri.019G048900 [exp] 407 / 1e-139 AT2G40490 633 / 0.0 Uroporphyrinogen decarboxylase (.1) Potri.013G083200 [exp] 221 / 7e-70 AT2G40490 319 / 3e-109 Uroporphyrinogen decarboxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [flax] [poplar] Methionine_synt PF01208 [flax] [poplar] URO-D Uroporphyrinogen decarboxylase (URO-D)
Representative CDS sequence Show only first row Show all	>Lus10043079 pacid=23168043 polypeptide=Lus10043079 locus=Lus10043079.g ID=Lus10043079.BGIv1.0 annot-version=v1.0 ATGCACATAGCTACTAGCTACCCTTGCACATTTGAATTAGTCCGTGGAGGTGCTACTCATAGAATAGGAAAACCTTCAATTCAATCCCAACTCTCTTATC CAATTCCCCATCCCCACAATCTGATTCCGGCGGAAGGGGGTCATCGGCGGGGCGTTAATCTTTCATATTCCGTTCCGACAACAAAGGATCAGATGAACTC TCTGAACAGCTCGGCAGTTGCGTGGAGGAGCTCTTCCATAGTATCCTCCCAGCTAGGGTTTTACTTCTCCAACAATGTGAATAGACTTTCAGTTGCTCCC CAATGTCAACACTTGTCCCGCCGTGGCTTTCGCATTTCTTGTTCTACTTCTTCCACAGATCCACTCTTGGTTAAGGCTGCAAGAGGTGAATCGGTTGCGA GGCCTCCGGCATGGATGATGCGTCAGGCAGGGAGGTATATGGCCGTTTACAGAAAGCTTGCCGAGAAATACCCATCCTTCAGAGAGAGGTCTGAGACAAC CGACCTCATTGTGGAAATTTCGTTGCAGCCCTGGGAAGCCTTTCACCCAGATGGTGTCATTATATTCTCCGATATACTTACACCACTACCAGCATTCGGC GTGTCCTTTGACATAGAAGACGTGCGAGGCCCAGTTATTCCATCTCCAATTCGTTCAAATGAGGATTTGAAGACTTTGCATCCCATCGAATTAGAAAAGC TGCAATTTGTCGGGGACTCTCTCAGGTTACTTCGCAAAGAGGTTGAGGGGAAAGCAGCTGTGCTTGGTTTTGTGGGATCGCCTTGGACTATTGGTACATA CATAGTGGAAGGTGGTATGACTCGCACATATACAACCATCAAGAGCATGTGCCATACAGCACCACATGTATTGAAGGCTCTCCTAACTCATTTAACACAG GCGATAGCTGATTATGCCGTTTTTCAAGTGGAGTCTGGTGCTCATTGCATTCAGATTTTTGATTCCTGGGGTGGGCAACTGTCTCCTGCCATGTGGGAGA TCTGGTCAAAGCCTTATCTCAAAGAGATAGTGAGTACAGTGAAGAGCAAATGTCCAGGAACACCCCTTGTTCTTTACATAAACGGAAACGGCGGTCTGCT TGAGCGTATGAAAGATATAGGAGTTGATGTGATTGGACTTGACTGGACAGTTGATATGGCCGATGGGAGGAAGCGTTTAGGGAACGAAATCAGCGTACAA GGAAATGTCGACCCTGCTTACTTGTTCTTGCCCCTCCCTGCAATTACTGATGAAATTCACAGAGTGGTGAATTGTGCTGGACCAAAAGGGCACATCCTTA ACTTAGGTCATGGTGTTCTTGTTGGGACGCCCGAAGAAGCTGTTGCACATTTCTTCGACGTTACGAAAAGCCTCGATTTCTCTTCCTCTGTCCAAGGTCG CAGTATGGTTGCAGCGACGACATAA
AA sequence Show only first row Show all	>Lus10043079 pacid=23168043 polypeptide=Lus10043079 locus=Lus10043079.g ID=Lus10043079.BGIv1.0 annot-version=v1.0 MHIATSYPCTFELVRGGATHRIGKPSIQSQLSYPIPHPHNLIPAEGGHRRGVNLSYSVPTTKDQMNSLNSSAVAWRSSSIVSSQLGFYFSNNVNRLSVAP QCQHLSRRGFRISCSTSSTDPLLVKAARGESVARPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTDLIVEISLQPWEAFHPDGVIIFSDILTPLPAFG VSFDIEDVRGPVIPSPIRSNEDLKTLHPIELEKLQFVGDSLRLLRKEVEGKAAVLGFVGSPWTIGTYIVEGGMTRTYTTIKSMCHTAPHVLKALLTHLTQ AIADYAVFQVESGAHCIQIFDSWGGQLSPAMWEIWSKPYLKEIVSTVKSKCPGTPLVLYINGNGGLLERMKDIGVDVIGLDWTVDMADGRKRLGNEISVQ GNVDPAYLFLPLPAITDEIHRVVNCAGPKGHILNLGHGVLVGTPEEAVAHFFDVTKSLDFSSSVQGRSMVAATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	0	1
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	1.0	0.9712
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	1.4	0.9701
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	2.2	0.9668
AT3G12110		ACT11	actin-11 (.1)		Lus10001694 [exp]	2.4	0.9618
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031791 [exp]	2.8	0.9670
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	3.0	0.9687
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10029124 [exp]	5.1	0.9479
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	5.3	0.9472
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	7.0	0.9564
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	8.0	0.9540

Compare expression of checked genes

Lus10043079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.