Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54630 491 / 2e-172 C2H2ZnF zinc finger protein-related (.1) AT4G27240 468 / 1e-163 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G11490 199 / 1e-59 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G75710 184 / 4e-53 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G29660 152 / 5e-42 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT4G22560 115 / 2e-29 unknown protein AT1G62520 115 / 5e-29 unknown protein AT4G12450 108 / 1e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018388 [exp] 259 / 2e-82 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10007625 [exp] 251 / 1e-76 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Lus10024333 [exp] 200 / 4e-61 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 203 / 1e-60 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 200 / 2e-59 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 187 / 3e-54 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 185 / 2e-53 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10018389 [exp] 151 / 4e-44 AT5G54630 166 / 4e-50 zinc finger protein-related (.1) Lus10040685 [exp] 153 / 6e-42 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415600 [exp] 562 / 0 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.011G131300 [exp] 561 / 0 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.004G030800 [exp] 311 / 8e-103 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.005G238300 [exp] 208 / 8e-63 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.005G173400 [exp] 206 / 2e-61 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 204 / 2e-61 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 196 / 4e-58 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.009G043900 [exp] 175 / 2e-50 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.001G249900 [exp] 174 / 5e-50 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.003G111800 [exp] 117 / 1e-29 AT4G22560 263 / 3e-88 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043080 pacid=23168096 polypeptide=Lus10043080 locus=Lus10043080.g ID=Lus10043080.BGIv1.0 annot-version=v1.0 ATGCCAACAGTGTGGCTGTCCTCCCTGAAGAGATCTCTACACTGTAAATCAGAGCCATCAGATGTTCATGACCCCAAATCCAGGAAGCAATTGAACTCAA TCTTGACCAGAAGAACAGGAGGAGGAGGAGGAGGAGGGAGGTCTGGGTGCTCAAGGTCTATAGCGAATCTCAAGGACGTCATCCATGGGAGCAAGAGGCA TTTGGAGAGGCCGCCAAGTTGTAGCCCTAGATCCATAGGGAGCAGTGAGTTCCTGAACCCAATAACCCATGAAGTGATTCTGAGCAACTCAAGGTGTGAG CTCAAAATCACTGGCTTTGGCAATTACAAGGGCGCCAGTGATGGAGTTTCTGACAGTGGTGGAAATGGAAGTGGTTCACCTTTCGTGGGTACTTTAAGGC CAGGCACACCAGGTCCTGGAGGGCATCCTACAATGCATTACTATAATCCTTCGTTTAAGAACAACTCATCATCAGCTGCTGCTCCTCCAGCAGCCAGAAA GAAGTCTCCATTGGTTTCATCAGACAGAGAAGGGATTCATGGACATTCAAGCAGAAGGGTGTCCCTTGATGCAGCAGATCATGGCAACGGCTCTTCTTCT ACAATCACTTGCCACAAATGTGGAGAGCAGTTTAGCAAATTTGAAGCTGCTGAAAACCATCATCTTTCTAAGCATGCTGTTACTGAGTTAGTGGAAGGAG ATTCATCCAGGAAGATAGTGGAAATCATATGCAAGACAAGCTGGCTAAAGAGTGAGAGCCATTGTGGCAGAATCGAGAGAGTACTGAAAGTTCACAATAT GCAGAAGACTCTAGCTCGGTTCGAAGAGTACAGGGAAATGGTGAAGAGTAGAGCAAGCAAGCTACAAAAGAAGCACCCTCGGTGCATAGCCGACGGGAAC GAGCTCCTGAGATTCTACGGCACCACAGTGGCGTGTTCACTAGGACTGAATGGTTCGTCGAGTCTGTGCATATCGGATAAATGCTGCGTGTGTCGGATTA TCAGGAACGGGTTCTCTGCGAAGAAGGAGCTGAAAGAGGGAGTGGGTGTATTCACAACGTCGACAAGTGGTAGAGCATTTGAATCCATTGAAATAGTGGA AGAAGATGCTTGTGTAAGGAAAGCACTGTTGGTATGCAGAGTGATCGCTGGGAGGGTTCATAGGCCTCTGGAGAAAATCCAAGAGATTGCTGGGCAGACA GGGTTTGATTCCTTGGCTGGCAAAGTTGGCCTTTATTCCAATATTGAGGAGCTTTATCTGCTCAATCCTAGAGCTCTATTGCCTTGCTTTGTTGTAATCT GCAAATCCTGA
AA sequence Show only first row Show all	>Lus10043080 pacid=23168096 polypeptide=Lus10043080 locus=Lus10043080.g ID=Lus10043080.BGIv1.0 annot-version=v1.0 MPTVWLSSLKRSLHCKSEPSDVHDPKSRKQLNSILTRRTGGGGGGGRSGCSRSIANLKDVIHGSKRHLERPPSCSPRSIGSSEFLNPITHEVILSNSRCE LKITGFGNYKGASDGVSDSGGNGSGSPFVGTLRPGTPGPGGHPTMHYYNPSFKNNSSSAAAPPAARKKSPLVSSDREGIHGHSSRRVSLDAADHGNGSSS TITCHKCGEQFSKFEAAENHHLSKHAVTELVEGDSSRKIVEIICKTSWLKSESHCGRIERVLKVHNMQKTLARFEEYREMVKSRASKLQKKHPRCIADGN ELLRFYGTTVACSLGLNGSSSLCISDKCCVCRIIRNGFSAKKELKEGVGVFTTSTSGRAFESIEIVEEDACVRKALLVCRVIAGRVHRPLEKIQEIAGQT GFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	2.8	0.9283
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10003751 [exp]	3.7	0.9001
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	4.5	0.9102
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	4.6	0.9156
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	4.7	0.9164
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	6.9	0.9029
AT5G62360			Plant invertase/pectin methyle...		Lus10031711 [exp]	7.3	0.8678
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	7.7	0.9087
					Lus10002011 [exp]	8.0	0.8988
AT3G13275			unknown protein		Lus10007090 [exp]	9.2	0.8556

Compare expression of checked genes

Lus10043080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.