Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54590 603 / 0 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT5G15730 351 / 5e-118 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G19300 238 / 8e-72 Protein kinase superfamily protein (.1) AT1G49730 234 / 4e-70 Protein kinase superfamily protein (.1.2.3.4) AT5G48740 236 / 1e-69 Leucine-rich repeat protein kinase family protein (.1) AT1G52290 227 / 6e-69 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G07070 224 / 7e-69 Protein kinase superfamily protein (.1) AT1G67720 234 / 9e-69 Leucine-rich repeat protein kinase family protein (.1) AT5G15080 226 / 2e-68 Protein kinase superfamily protein (.1) AT3G58690 223 / 2e-68 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032672 [exp] 793 / 0 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10008540 [exp] 385 / 3e-131 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10008491 [exp] 384 / 5e-131 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 246 / 2e-74 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 245 / 4e-74 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10038174 [exp] 240 / 4e-73 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 241 / 3e-71 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 240 / 9e-71 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024020 [exp] 233 / 2e-70 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415300 [exp] 651 / 0 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.011G131200 [exp] 639 / 0 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.017G101400 [exp] 400 / 3e-137 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G113400 [exp] 396 / 9e-135 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 251 / 2e-76 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 249 / 7e-76 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.019G094200 [exp] 233 / 4e-71 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.013G025700 [exp] 230 / 6e-71 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 235 / 1e-70 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.019G094600 [exp] 236 / 1e-69 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10043083 pacid=23168212 polypeptide=Lus10043083 locus=Lus10043083.g ID=Lus10043083.BGIv1.0 annot-version=v1.0 ATGAAAGAGGAATCATCTGGATTGATTATTGGGATATCAATAGGAGTGGTGATTGGTGTGCTCTTGGCTATTCTAGCATTCTTTGGGTTTCGGTACCACA GGAAGAGATCCCAGATTGGTAACAGCAGTTCTAGGAGAGCAGCGACGATTCCAATCAGAGAAAATGGTGGTGATGCTAGTACAGCCATGTCTGATTCCAC CATTGGTCCAGATTCGCCGGTGAAATCATCAGCGCCGCCAAGTGGGATGTCGTTTTGGCTCGAAACGTTCAAGAGGAACAATGTTGTGTCACTTTCTGGA TTGCCTGAGTACTCTTACAAGGATCTCCAAAAGGCAACTGGTAACTTTACAACCGTGATTGGGCAAGGAGCATTTGGTTCTGTTTATAAAGCTGAGATGC CTACTGGGGAGACTGTTGCTGTTAAAGTGCTTGCTACGGATTCTAAACAAGGGGAGAAAGAGTTTCATACTGAGGTTATGCTTCTGGGAAGGTTGCATCA CAGGAACCTAGTGAATTTGGTCGGGTACTGTTCGGAGAAAGGGAGACACATACTGATATATGTATACATGAGCAAAGGCAGCTTAGCTTCTCATTTATAC AGCGAAAATCTCGAACCATTGAATTGGGATGTGAGAGTAAACATAGCTCTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGACGGGGCAGTTCCACCAG TGATTCACCGTGACATTAAATCATCAAACATTCTGCTGGATCGTTCAATGAAAGCCAGGGTGGCTGACTTTGGACTTTCAAGAGAAGAAATGGTGGATAG ACATGCTGCCAACTTAAGGGGAACGTTTGGATACCTTGATCCTGAGTATATATCTACAAGGATTTTCACGAAGAAGAGCGATGTGTACAGCTACGGAGTG TTGCTTTTCGAACTTATAGCTTGCAGAAACCCTCAGCAAGGGCTGATGGAATATGTTGAGCTAGCAGCAATGAACACGGAAGGGAAAGTAGGGTGGGAGG AAATGGTGGACTCGCGTCTCGAAGGAAGGTTCGACATGAACGAGCTGAATGAAGTAGCAGCTCTTGCATACAAATGCGTAAACCGCGTCCCGAAGAAACG GCCTTCAATGAGGGACATTGTGCAGGTGTTGTCAAGGATGCTCAAGTTGCGCCACAGCAGAAAGCATCGACTCAAGAAGCTCATGTCTGGGTTGGCAGAG GAAGTTACGATCGATATTGAGATGCCAAGAATCAAAGGTGCTGCTGAACGCCACCACGAGCGGGAAGAGTCAATTGACAGCACGGAGACTTGTGAAGTGA ATTAG
AA sequence Show only first row Show all	>Lus10043083 pacid=23168212 polypeptide=Lus10043083 locus=Lus10043083.g ID=Lus10043083.BGIv1.0 annot-version=v1.0 MKEESSGLIIGISIGVVIGVLLAILAFFGFRYHRKRSQIGNSSSRRAATIPIRENGGDASTAMSDSTIGPDSPVKSSAPPSGMSFWLETFKRNNVVSLSG LPEYSYKDLQKATGNFTTVIGQGAFGSVYKAEMPTGETVAVKVLATDSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCSEKGRHILIYVYMSKGSLASHLY SENLEPLNWDVRVNIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDRSMKARVADFGLSREEMVDRHAANLRGTFGYLDPEYISTRIFTKKSDVYSYGV LLFELIACRNPQQGLMEYVELAAMNTEGKVGWEEMVDSRLEGRFDMNELNEVAALAYKCVNRVPKKRPSMRDIVQVLSRMLKLRHSRKHRLKKLMSGLAE EVTIDIEMPRIKGAAERHHEREESIDSTETCEVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10043083 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	2.4	0.8430
AT5G12240			unknown protein		Lus10026824 [exp]	4.1	0.8594
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	6.2	0.8401
AT1G28250			unknown protein		Lus10015429 [exp]	6.7	0.8031
AT4G34960			Cyclophilin-like peptidyl-prol...		Lus10025052 [exp]	8.7	0.8243
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10014256 [exp]	9.9	0.7666
AT1G75260			oxidoreductases, acting on NAD...		Lus10012616 [exp]	11.5	0.7297
AT1G28250			unknown protein		Lus10014006 [exp]	11.8	0.8097
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	12.0	0.8238
					Lus10038131 [exp]	13.7	0.7677

Compare expression of checked genes

Lus10043083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.