Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 128 / 1e-36 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 65 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G13270 46 / 4e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 43 / 9e-05 NHL25 NDR1/HIN1-like 25 (.1) AT1G64450 41 / 0.0004 Glycine-rich protein family (.1) AT1G54540 40 / 0.0005 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032671 [exp] 330 / 6e-116 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 201 / 8e-65 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 200 / 2e-64 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 179 / 6e-57 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 175 / 3e-55 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 87 / 7e-21 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 82 / 3e-19 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 78 / 2e-17 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007904 [exp] 78 / 3e-17 AT2G46150 159 / 1e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G112800 [exp] 177 / 6e-56 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 173 / 3e-54 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 80 / 2e-18 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 76 / 2e-16 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 74 / 4e-16 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 73 / 6e-16 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 66 / 3e-13 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 64 / 1e-12 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 63 / 8e-12 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G141200 [exp] 49 / 4e-07 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10043084 pacid=23168361 polypeptide=Lus10043084 locus=Lus10043084.g ID=Lus10043084.BGIv1.0 annot-version=v1.0 ATGGAGGTGCAGGCCTTGAATCCGGCAAAGCTTCCACCTTCTCCTCCCCCTCCGGAAACCAACAACAACCCATTTGGCAACTCCGACATGGTCGGCCAGA AGGGCCGACGAAAGAGGAGGAGGAGAAACATCTGCCTGGTGTCCACAGCGGCGACAATCATCCTGGTAGTCCTCGTCATGCTAATCCTCGCGTTGACCGT GTTCAAGGCCAAGAAGCCCGTCACCAACATGGACAACATCACCCTCAGCGACCTCAGCGTCTCTTTGGACATGGCCAACAGGCTGGCGCTCCGGGTCAAC CTCACCCTGGACGTCGACATGACGGTCAACAACCCAAACAAGGTCGGCGTCAGTTTGTCGGACGGCAACTCTGCTTCCTTGATTTACAGAGGCGAACAGG TCGGGGAGATCCCCATGCCAGCTGGCAAAATCTCGGCCGACTCGACTACGGGGATGAACATGACTTTGACCTTGATGGCTGACCGTCTGATTTCCAGGTC CCAGCTGTACGCTGACGTGGTGGCTGACGTACTTCCTCTGAATGTGTATGCGAAGATTAAGGCGAAAGTGTCCATCTTTAAGGTGATTAAGATCCGGGTC ACTGCGGTTACCACCTGTGATATCACCGTCTTTGTCTCCAACAGGACTGTTGGTCAACAGAACTGCAACAGCAAGACTAAATTCTGA
AA sequence Show only first row Show all	>Lus10043084 pacid=23168361 polypeptide=Lus10043084 locus=Lus10043084.g ID=Lus10043084.BGIv1.0 annot-version=v1.0 MEVQALNPAKLPPSPPPPETNNNPFGNSDMVGQKGRRKRRRRNICLVSTAATIILVVLVMLILALTVFKAKKPVTNMDNITLSDLSVSLDMANRLALRVN LTLDVDMTVNNPNKVGVSLSDGNSASLIYRGEQVGEIPMPAGKISADSTTGMNMTLTLMADRLISRSQLYADVVADVLPLNVYAKIKAKVSIFKVIKIRV TAVTTCDITVFVSNRTVGQQNCNSKTKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10043084 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10011829 [exp]	1.4	0.9729
AT4G35030			Protein kinase superfamily pro...		Lus10017273 [exp]	2.0	0.9723
AT3G09220		LAC7	laccase 7 (.1)		Lus10035546 [exp]	7.7	0.9565
AT2G45220			Plant invertase/pectin methyle...		Lus10027202 [exp]	7.7	0.9626
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024076 [exp]	10.9	0.9560
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021318 [exp]	15.2	0.9533
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10034349 [exp]	16.2	0.9648
					Lus10016839 [exp]	17.0	0.9627
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10013594 [exp]	21.7	0.9559
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	34.6	0.9540

Compare expression of checked genes

Lus10043084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.