Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15410 459 / 1e-158 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G17440 78 / 2e-15 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT5G56040 77 / 9e-15 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G35470 73 / 1e-13 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT4G26540 73 / 2e-13 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G26050 69 / 2e-12 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT3G24240 67 / 9e-12 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G56370 67 / 2e-11 Leucine-rich repeat protein kinase family protein (.1) AT5G48940 66 / 4e-11 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G30105 64 / 7e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032667 [exp] 443 / 4e-156 AT3G15410 389 / 1e-132 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10032668 [exp] 141 / 2e-39 AT3G15410 261 / 2e-84 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10035976 [exp] 75 / 2e-14 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10000900 [exp] 71 / 8e-13 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 69 / 2e-12 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10017782 [exp] 69 / 3e-12 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000509 [exp] 69 / 4e-12 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 66 / 3e-11 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027688 [exp] 64 / 8e-11 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121700 [exp] 498 / 8e-174 AT3G15410 749 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.005G098600 [exp] 81 / 3e-16 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 79 / 1e-15 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.007G065000 [exp] 77 / 5e-15 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.018G088200 [exp] 71 / 5e-13 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.014G195100 [exp] 71 / 6e-13 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.001G144100 [exp] 70 / 9e-13 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.006G072700 [exp] 67 / 7e-12 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.019G120733 [exp] 66 / 2e-11 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 66 / 2e-11 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10043086 pacid=23168098 polypeptide=Lus10043086 locus=Lus10043086.g ID=Lus10043086.BGIv1.0 annot-version=v1.0 ATGTATGAGTTTTCCTTTAGGTTGGATTGTTCAAGCAATAAGCTCTCTGAACTTCCCGCTTCACTTGGAAGATGCGTGGACCTGTCTGATCTCAAGGCAT CGAAGAATTGTATCAGTAGCTTGCCGGCCGAGCTAGCCAATTGTTCAAAACTGACAAAATTAGATGTGGAGGGTAACAAGCTCAGGATTTTGTCTAGCAA TCTGGTGGCGTCATGGACCAAGCTTACAGAACTTAATGCAGAAATTGCTTCAATCCCAGCGTCCATAGAAGGATGCTCTTCTCTGGCCGAATTATACCTT GGGAATAACTCATTGTCTTCTTTACCCAATGAGATTAGGGCGCTTGGTTGCTTAGCCACATTAGATCTGCACTCAAACCAGCTGAAGGAGTATCCAGTTG AGGCTTGCAAGTTAAGCCTTTCACTTCTGGATCTTTCAAACAATTCATTAAGTGGATTGCCTCCGGAGATTGGGAAGATGACAACTCTTCGGAAAATTTT GCTTAATGGCAATCCAATACGAACAATTAGAAGCTCTTTGGTTTCTGGACCAACTCCTGCTTTATTGAAATTTTTACGCAGTAGGCTCCCTCAAGATGGA GGTTCAGAATCAAGTACTTCAGAAAAGGAGGAAATAGTTGCCACTGCAGCGAGGCTATCCCTCGGTTCAAAGGATCTTTCCTTGGAAGGGCTGGGTTTGA GCGATGTTCCATCAAAGGCATGGGAATCTGGTGAAATTATTAAACTTGATCTTTCTAGGAATGCCATTGAAGAGGTTCCTGTACAACTTTCCACGTGTTC CTCTATACAGATTCCTGCTGATGCCTTCCAAGCTGTGCCGATGCTTCAAATTCTCGACCTAAGCTGTAATCCATCATCCTTAGCCAGAGACCCAGCATTT TCCAGCTTACAACATTTGCACGAGCTTTATCTAAGGCGTGTTCAATTGCAGGAAATTCCATCTGATATATTATGCTTAAAGCAATTAAAGATCCTATACT TGAGTCAAAATTCAATTGAATCTATCCCAGTGGAATTTAAACATTTCGTTCACCTCACTGAGTTTGACTTATCTGACAACAATATTTCAGTGCTCCCTGC AGAATTGGGCTTACTGGAGCCAACATTGCAGGTGTTGAGGCTTGAGGGGAATCCATTGAGAAGCATCCGGAGGCCAATTCTAGAGAGAGGAACGAAAGCA GTTCTTCAGTATCTGAAGGACAAACTTCCGGAGCAGTAG
AA sequence Show only first row Show all	>Lus10043086 pacid=23168098 polypeptide=Lus10043086 locus=Lus10043086.g ID=Lus10043086.BGIv1.0 annot-version=v1.0 MYEFSFRLDCSSNKLSELPASLGRCVDLSDLKASKNCISSLPAELANCSKLTKLDVEGNKLRILSSNLVASWTKLTELNAEIASIPASIEGCSSLAELYL GNNSLSSLPNEIRALGCLATLDLHSNQLKEYPVEACKLSLSLLDLSNNSLSGLPPEIGKMTTLRKILLNGNPIRTIRSSLVSGPTPALLKFLRSRLPQDG GSESSTSEKEEIVATAARLSLGSKDLSLEGLGLSDVPSKAWESGEIIKLDLSRNAIEEVPVQLSTCSSIQIPADAFQAVPMLQILDLSCNPSSLARDPAF SSLQHLHELYLRRVQLQEIPSDILCLKQLKILYLSQNSIESIPVEFKHFVHLTEFDLSDNNISVLPAELGLLEPTLQVLRLEGNPLRSIRRPILERGTKA VLQYLKDKLPEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10043086 [exp]	0	1
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10030548 [exp]	9.8	0.7005
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	18.3	0.7124
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10014190 [exp]	20.9	0.6859
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	38.9	0.6879
AT1G76600			unknown protein		Lus10012442 [exp]	43.5	0.7006
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10032093 [exp]	50.8	0.6214
AT2G30942			Protein of unknown function (D...		Lus10007167 [exp]	56.5	0.6831
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	57.1	0.6813
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10039295 [exp]	77.3	0.6682
AT4G28300			Protein of unknown function (D...		Lus10018593 [exp]	94.0	0.6317

Compare expression of checked genes

Lus10043086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.