Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07840 268 / 3e-89 Pectin lyase-like superfamily protein (.1) AT3G07820 268 / 4e-89 Pectin lyase-like superfamily protein (.1) AT5G48140 263 / 6e-87 Pectin lyase-like superfamily protein (.1) AT3G07830 250 / 3e-82 Pectin lyase-like superfamily protein (.1) AT3G14040 234 / 3e-75 Pectin lyase-like superfamily protein (.1) AT3G07850 232 / 2e-74 Pectin lyase-like superfamily protein (.1) AT4G18180 221 / 1e-70 Pectin lyase-like superfamily protein (.1) AT1G78400 199 / 3e-62 Pectin lyase-like superfamily protein (.1) AT1G17150 196 / 4e-61 Pectin lyase-like superfamily protein (.1) AT2G33160 198 / 1e-59 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043088 [exp] 418 / 2e-148 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 282 / 2e-94 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 277 / 2e-92 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 277 / 2e-92 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 263 / 6e-87 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 270 / 5e-86 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 263 / 1e-84 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 254 / 6e-83 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 254 / 7e-83 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 296 / 4e-100 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 296 / 4e-100 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 296 / 4e-100 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 292 / 1e-98 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 290 / 2e-97 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 290 / 2e-97 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 290 / 2e-97 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 261 / 1e-86 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 228 / 7e-73 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G162300 [exp] 208 / 2e-66 AT3G07850 358 / 3e-122 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10043087 pacid=23167906 polypeptide=Lus10043087 locus=Lus10043087.g ID=Lus10043087.BGIv1.0 annot-version=v1.0 ATGAATGATGGGCTTGTGGAAGGGATAACAAGCAAAGACAGCAAGAACTTCCACGTCAATGTTCTAGGGAGCAAGAACTTCACATTCAGCAAGTTCACAG TGGTGGCTCCCGGAAACAGCCCCAACACCGACGGAATCCACATGGGCAGATCCACTGACATTAAGATTCTCGACACATCCATTTCGACAGGGGACGATTG CATCTCGATCAGAAATGGGTTGGAGCAACTAACGGTGGAAAGAGTCACTTGCGGTCCGGGACATGGTATCGCGGTTGGAAGTCTGGGACGTTACCCGAAT GAGGCGCCCGTTAAGGGAATCTTCGTCAAGAACTGCACCTTGAAAGGGACCACCAACGGGGTGAGAATCAAGACGTGGCCCCATTTCGAGGATATCGTGT TGGAAGATGTGTTCAACCCTATCATAATCGACCAAGTATACTGCCCGTGGAATAAGTGCAAATCGAAGGCGCCGTCCAAGGTGACGATTAGTAATGTTAG CTTTAAGAACATAAGAGGAACGAGCAGGTGTGTGGAAGCGATAAAGATAGATTGTAGCCCAGCACATCCTTGTAAGAATGTTGAACTGGCTGGTATTGAC ATCAAGGCTATTGATGGTCCTGCTGCTATAGCAGTTTGCAACAATGTTAAGCCAATTATCACTGGTATTGTTAATCCTCCTGACTGTCAGTAA
AA sequence Show only first row Show all	>Lus10043087 pacid=23167906 polypeptide=Lus10043087 locus=Lus10043087.g ID=Lus10043087.BGIv1.0 annot-version=v1.0 MNDGLVEGITSKDSKNFHVNVLGSKNFTFSKFTVVAPGNSPNTDGIHMGRSTDIKILDTSISTGDDCISIRNGLEQLTVERVTCGPGHGIAVGSLGRYPN EAPVKGIFVKNCTLKGTTNGVRIKTWPHFEDIVLEDVFNPIIIDQVYCPWNKCKSKAPSKVTISNVSFKNIRGTSRCVEAIKIDCSPAHPCKNVELAGID IKAIDGPAAIAVCNNVKPIITGIVNPPDCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07840			Pectin lyase-like superfamily ...		Lus10043087 [exp]	0	1
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	2.0	0.8671
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	3.2	0.8410
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	8.1	0.8462
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	8.5	0.8670
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	9.5	0.8402
AT3G02125			unknown protein		Lus10013196 [exp]	11.0	0.8369
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	11.2	0.8404
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	13.0	0.8304
					Lus10005955 [exp]	15.4	0.8262
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	17.2	0.8336

Compare expression of checked genes

Lus10043087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.