Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) AT3G07840 352 / 8e-120 Pectin lyase-like superfamily protein (.1) AT5G48140 352 / 1e-119 Pectin lyase-like superfamily protein (.1) AT3G07830 345 / 7e-117 Pectin lyase-like superfamily protein (.1) AT3G14040 294 / 1e-96 Pectin lyase-like superfamily protein (.1) AT3G07850 293 / 6e-96 Pectin lyase-like superfamily protein (.1) AT4G18180 280 / 1e-91 Pectin lyase-like superfamily protein (.1) AT1G02790 276 / 6e-90 PGA4 polygalacturonase 4 (.1) AT1G78400 275 / 2e-89 Pectin lyase-like superfamily protein (.1) AT2G33160 277 / 2e-87 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043087 [exp] 418 / 3e-148 AT3G07840 268 / 4e-89 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 416 / 7e-145 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 409 / 5e-142 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 409 / 5e-142 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 390 / 6e-134 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 389 / 9e-134 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 387 / 5e-129 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 372 / 7e-128 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 357 / 3e-119 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 404 / 3e-140 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 404 / 3e-140 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 404 / 3e-140 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 400 / 7e-139 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 397 / 1e-137 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 397 / 1e-137 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 397 / 1e-137 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 356 / 2e-121 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 301 / 2e-99 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G038100 [exp] 271 / 4e-88 AT1G78400 357 / 4e-121 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10043088 pacid=23168244 polypeptide=Lus10043088 locus=Lus10043088.g ID=Lus10043088.BGIv1.0 annot-version=v1.0 ATGTTGGCAGCCATAAGTTTCACTAAACTTGATGCTCAAATATTTGATATAACAAAGTATGGTGCAACCCCAACCCCCGATTGTGATATCGCACAGCCGC TGACAAAAGCGTTTACCGATGCTTGTGCATCGCCAACGCCATCGACAGTATTGATCCCAGCCGGGACATTCTACTGCGGTATAGTAAGATTGAATGGCCC ATGTAAAGCGCCCTTAAACATTCAACTCTTAGGCACCATCACCGCGCCGCCTACCCTCCCAGGCGACACTTGGTTTTTCTTCGCCTACATTGACAACTTC TCGATTACTGGCTGCGGCACTTTCGATGGTCAAGGCACTGTCATTTATGGCAAAATAAAGAGTAAAACCATTAATTTGCGGTTCCATGCGATAAATAATG GGTTGGTGGAAGGTATAACAAGCAAAGACAGCAAGAACTTCCACGTTAATGTGCTAGAAAGCAAGAACTTCACATTCAGCAAGTTCACAGCGGTGGCTCC TGGAGACAGCCCCAACACAGACGGAATCCACATGGGTAGATCCACTGACATCAAGATTCTCGACTCAATAATATCGACTGGGGACGATTGCATCTCCGTC GGGGATGGGTTGCAGCTACTAACGGTGGAAAGGGTCACTTGCGGGCCGGGACATGGTATCGCGGTGGGAAGTTTGGGACGTTACCCGAATGAGGGGCCGG TCAGAGGGATCTTTGTGAGGAACTGCACCTTGAAAGGGACCACCAACGGCGTGAGAATCAAGTCGTGGCCCGATATGGAAGTGTGCCATGTTTCTGACAT CCATTTCGAGGATATCGTGTTGGAAGATGTGCTCAACCCTATCATAATCGACCAAGTATACTGCCCGTGGAATAAGTGCAAATCGAAGGCGCCGTCCAAG GTGACGATTAGTAATGTCAGCTTTAAGAACATAAGAGGAACGACCAAGTGTCTGGAAGCGATAAAGATAGATTGTAGCCCAGCACATCCTTGTAAGAATG TTGAACTGGCTGATATTGACATCAAGACTATTGATGGTCCTGCTGCTATAGCAGTTTGCAACAATGTTAAGCCAATTATCACTGGTATTGTTAACCCTCC TGGCTGTCAGTAA
AA sequence Show only first row Show all	>Lus10043088 pacid=23168244 polypeptide=Lus10043088 locus=Lus10043088.g ID=Lus10043088.BGIv1.0 annot-version=v1.0 MLAAISFTKLDAQIFDITKYGATPTPDCDIAQPLTKAFTDACASPTPSTVLIPAGTFYCGIVRLNGPCKAPLNIQLLGTITAPPTLPGDTWFFFAYIDNF SITGCGTFDGQGTVIYGKIKSKTINLRFHAINNGLVEGITSKDSKNFHVNVLESKNFTFSKFTAVAPGDSPNTDGIHMGRSTDIKILDSIISTGDDCISV GDGLQLLTVERVTCGPGHGIAVGSLGRYPNEGPVRGIFVRNCTLKGTTNGVRIKSWPDMEVCHVSDIHFEDIVLEDVLNPIIIDQVYCPWNKCKSKAPSK VTISNVSFKNIRGTTKCLEAIKIDCSPAHPCKNVELADIDIKTIDGPAAIAVCNNVKPIITGIVNPPGCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07820			Pectin lyase-like superfamily ...		Lus10043088 [exp]	0	1

Compare expression of checked genes

Lus10043088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.