Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79030 369 / 1e-124 Chaperone DnaJ-domain superfamily protein (.1) AT1G16680 348 / 3e-116 Chaperone DnaJ-domain superfamily protein (.1) AT5G49580 197 / 2e-57 Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 46 / 2e-05 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G77020 45 / 5e-05 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G68370 44 / 0.0002 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT5G16650 40 / 0.0004 Chaperone DnaJ-domain superfamily protein (.1) AT3G62600 42 / 0.0005 ATERDJ3B DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032666 [exp] 442 / 5e-153 AT1G79030 772 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10017085 [exp] 193 / 2e-55 AT5G49580 670 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10037801 [exp] 132 / 9e-34 AT5G49580 595 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10028809 [exp] 48 / 7e-06 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 48 / 7e-06 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10014584 [exp] 47 / 9e-06 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 47 / 1e-05 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10041972 [exp] 47 / 2e-05 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 47 / 2e-05 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438300 [exp] 397 / 2e-135 AT1G79030 783 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G142000 [exp] 373 / 4e-126 AT1G79030 749 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G148900 [exp] 195 / 2e-56 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G101800 [exp] 174 / 8e-51 AT5G49580 355 / 1e-116 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G158300 [exp] 46 / 2e-05 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.008G123200 [exp] 44 / 0.0001 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 44 / 0.0001 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.014G122600 [exp] 43 / 0.0002 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 43 / 0.0002 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.008G193500 [exp] 42 / 0.0003 AT1G24120 568 / 0.0 ARG1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10043089 pacid=23168044 polypeptide=Lus10043089 locus=Lus10043089.g ID=Lus10043089.BGIv1.0 annot-version=v1.0 ATGGAGGACATCGGGCTGTTTAAGCAAGGTTGGAAATGGCTGCAAATGCAGAAGCACACCTGCGCAAGGATCAGGACTGTTGTTGGATGTGTTAGAGACA AAGCTGGTGTGTTTATAGACCGCCATTGGCCAATGGTTTGCGGCGGGTTTGCCAGATTTGGGAAGTTCGCTGCTCTGGTGTTGATCTATTGGAAAGACTG CTCTTTGAGGGGTTTCCTATCGGTTGTCCAACTGGGTTCCGCTGCTCTGCTTCTTATTATGTGGAGCTGCTTTCTTAGTCTCACTTCAATGTCATGCTTG ATCTATGTGCTGCTCAGTATGGCCATTCTTGTGCATCCTGATAAAAACATGGGGAGCTCGTTAGCAAGTGAATCATTTAAGAAACTTCAGTGTGCCTATG AGGTTCTCTCTGATGGCACTAAGAAGCGGGATTATGATGAGCAATTACGGAAGGAAGAGCTGACCACTAAAAGTGTGTGTCAGAAATTCAATAATACCTC AAGACAGGATTCTCCGGACTATTGCTCTGAGGAATCGAGGCGCATCCAGTGTACCAAGTGTGGTAATTCACATATATGGGTCTGCACAAATAGGAGTAAG GCCAAGGCGAGATGGTGTCAGGATTGTTGCCAATACCATCAAGCCAAAGATGGTGATGGATGGGTTGAATACAAGGGTTCATTGGGTTTTGATAGGCCTG AAAAGGTGGAAATCCCCCGCGCTTTCGTATGTGCCGAAAGCAAAATATTTGATGTGTCTGAGTGGGCTATTTGTCAGGGAATGGCGTGTAGACCCAACAC ACATCGGCCAAGTTTCCACGTGAACATGGTCGGTTTGGAGAAGACACAGCGGACGAATTCAGGACGATATCCGTGGGATTTAGATGCGGAGATGATGGAT GAAGATGAAGAAGAATTTGAGCTGTGGCTTCAAGAAGCACTAGCATCGGGACTGTTCTGCGAAACTTCGAAACGAAGGAAAAGCTGGAGTCCTTTCAAGT TGAATCCAAAGAAAGGGAAGAAGCAATGGCGGAGAACTTCAACCTGA
AA sequence Show only first row Show all	>Lus10043089 pacid=23168044 polypeptide=Lus10043089 locus=Lus10043089.g ID=Lus10043089.BGIv1.0 annot-version=v1.0 MEDIGLFKQGWKWLQMQKHTCARIRTVVGCVRDKAGVFIDRHWPMVCGGFARFGKFAALVLIYWKDCSLRGFLSVVQLGSAALLLIMWSCFLSLTSMSCL IYVLLSMAILVHPDKNMGSSLASESFKKLQCAYEVLSDGTKKRDYDEQLRKEELTTKSVCQKFNNTSRQDSPDYCSEESRRIQCTKCGNSHIWVCTNRSK AKARWCQDCCQYHQAKDGDGWVEYKGSLGFDRPEKVEIPRAFVCAESKIFDVSEWAICQGMACRPNTHRPSFHVNMVGLEKTQRTNSGRYPWDLDAEMMD EDEEEFELWLQEALASGLFCETSKRRKSWSPFKLNPKKGKKQWRRTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10043089 [exp]	0	1
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	1.0	0.8822
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037503 [exp]	2.0	0.8704
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	4.9	0.8395
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	6.7	0.8459
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	10.4	0.8243
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	10.9	0.8305
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	13.0	0.8372
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	14.1	0.8367
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	15.9	0.8065
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	16.6	0.8056

Compare expression of checked genes

Lus10043089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.