Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27430 498 / 2e-159 CIP7 COP1-interacting protein 7 (.1.2) AT1G61100 313 / 1e-92 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) AT5G43310 224 / 4e-60 COP1-interacting protein-related (.1.2.3.4) AT3G14172 160 / 1e-39 unknown protein AT1G17360 138 / 6e-33 unknown protein AT1G72410 115 / 8e-26 COP1-interacting protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032660 [exp] 954 / 0 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10032661 [exp] 731 / 0 AT1G61100 127 / 3e-31 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10011217 [exp] 318 / 2e-94 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10018471 [exp] 318 / 2e-94 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10021172 [exp] 214 / 2e-56 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10011809 [exp] 196 / 8e-51 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10000225 [exp] 178 / 3e-49 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1) Lus10008140 [exp] 162 / 4e-40 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10013178 [exp] 159 / 3e-39 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403700 [exp] 431 / 5e-133 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.011G122900 [exp] 430 / 1e-132 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.011G046900 [exp] 422 / 8e-132 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.004G038300 [exp] 398 / 5e-123 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.008G168300 [exp] 249 / 4e-68 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.010G070200 [exp] 244 / 3e-66 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.001G164900 [exp] 171 / 6e-43 AT3G14172 521 / 1e-161 unknown protein Potri.003G070400 [exp] 158 / 4e-39 AT3G14172 544 / 3e-170 unknown protein Potri.019G064000 [exp] 81 / 4e-15 AT3G14172 99 / 8e-21 unknown protein Potri.013G091900 [exp] 78 / 3e-14 AT3G14172 122 / 7e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043092 pacid=23168314 polypeptide=Lus10043092 locus=Lus10043092.g ID=Lus10043092.BGIv1.0 annot-version=v1.0 ATGGATCCCCGGACTCTCCTTGATCACGCTCTCTTCCAGCTCACTCCTACCAGAACCAGATGTGATCTTATGGTATTTGCTGCTTCTGGCGGCGCAAGTG AGAAATTAGCATCTGGGCTTCTTCAGCCATTTGTATCTCACTTAAAAACTGCCAACGATCAGATCTGTAAAGGCGGCTACTCCATCATTCTCCGCCCTTC TTCCTCTTCACCCAATTCCTCCACTCCCTGGTTCACTAAAGCCACTCTCCAAAGATTTGTTAGGTTTGTCAGCACGCCAGAAGTTCTTGAGAGATTTGTG ACTATTGAAACGGAACTTGAGCAGATTGATAGTTCAGTTCACTCTCATGAGCACTACAAATCAACTGTGTCATCGAAGGATGGGGTTGGTGATGCTGCAT CCGAGGAAAGCTCAAAGGTTCACCTTCAGCGTGCTTTGGAATCTAGGAAAGCTATCCTACGCAAAGAACAAGCAATGGCCTATGCCCGTGCATTGGTTAC TGGATTCGAGCTTGACTCTATTTATAATCTTATGTCTTTCGCCGATGCTTTTGGCGCTTCACGGTTAAGCGAAGCATGCATAAACTTCACGGAGTTGTGC AAGAAGAAGAATCAAGATCGACGTTGGCTGGATGAAATCGTGGCAATGCAAGCTGCTAATCTGGAGTTGCCTTCTCTCAGGAATTCTGGGATTACACTTG CTGGAGAAGAAAGTTATCCTAGTCAGTTGTCTGCTTTGAGACTGAATGGCTCAATTGAAGCCTCTGATTCAGCTACTAGTATCGGAAGCGTTGACCTAAG CCAAGATAGCAGTTTGCCACCACCATCAGCGACATGGCCGAATCATCTCCCTCATTACATGCACAATTTTCAAGGTCCAGTCTATCAACAGATGGCTCCA TACCAAGGCTATGGTTACTTCCCTGGGAATATGCAATATGACCCCAACATTTCGCATCACTTGGACTCCGATGATTGCAGAAAAAAGTCATCCTCTAGGA ACCAGAAGAAGAACCATGATGACTCCACTGGCAGTGGTTCGAGTTCAGAGACCGAGTTGGAGCAACTCAAGACGGATGATAGAACAGATGAGCATGTCCG CAGGAAAAGGCATAGCAAGAAGTCTTCAAGAACAGTTGTGATTCGTAACATTAACTACATTACTTCGAGGAGAAATGGAGAAAAGGGCAACACTTCCGGG GAGGAATCGGAGGAAGACGAGTTCATCAACGGAGAAGCTCTGAAGCAGCAAGTGGAAGAGGCTGTTGGTTCTTTGGGGAGACAGAATAAGTCAGCTCCGC GTCATCATAGGAAATCACAATGTGATAGCGACATGAACAAAAAGAATGAGGAAGAAGTTAATGGGAAGGACCAGTGGAGCTCTTTCCAGAGCCTTCTCAT GAAGGAAGATTATGCAGACACATATGACATTGCACCAAAGTCTTTCCAAGTTGATGGAGAATCCCCGAAACAAAGGAAGCAGCAAATGGTGGCAAATGAT TCCTTTGTTGCTACCAGTAAGGACACCACAAGTGAACCCCAAACTCGGATCCAAAATTTTGAAGGTGACATTAATAGCCGCGTTGTGATGAAGAACAAGG ATGGATGTTACAAGGATCTATTATTTCCCCGAAGACCGGAGGAGAAATCAGATGACCACTTGCTAGCCTCACTTTCTGGTTATTCTTCCGAGTCACAGAT AATCAAAGTTCAGAAAGGAGGAGGAGACTGTTTTATTGGCACCCAGATGGACAAATCGGTTTACAAGAATGGCAGCGAGGACATCAACCTGTTTGATATC GAACATCCATGCGTTGTGGAAAACAAAAAGGACGATGTTCTTGCTGATGATTCATTCATGATTCAGGATCGATCGTTCGAAGATGATGGCTCTCGTTCCA TATTAAGAACTGACATAAGCATGGTCGCGGATGTAGCTGAATTTGCTCAATGTGGAAATGGCGGTCCAGATCCCTCACGAGAAAAAGTTAAAGCAGTTGA TTCCTATGAGCCAGATGACCTTTATATGGTGCTTGGGCGTGCTCCTGAAGCCGAAAAGGCCGTCCCTTCTTGGACCCCGGAGATAGATTATGAAAATGAC ATTTTATCTGCTGAGACCAACAGAAAGGGCTCAACTGTGGAAAAAACTGCTGTGGCGACTAATTCAGGCAAAGAAATTAACAAGGTGAAAGCTTCTGGTG GAAATCTTGGAAGAAGAAAATCGGACACTGCCTCGAAAACCAGGAAGCCTTCCCTTGGAAGTAGAACAACTCTTCCAAAGATGAAATCCGAGAGGGAAGA AGAGAGTAGGAAAAAAGCAGAGGCATTAAAGCTCGAACGTCAGAAAAGAATTCCAGCGAGGAGTTCCGTGGGGAATAGTCCTGTGACATCGAGGAGAAAC TCGACTTCTAATGATGGGAAGTCCAAGAAGACGGTTTTCAGAAGTTCCACCATTGATCGCCTTGCTACTGCTAGGACAACGGCAAAGGTGGAGTCAACTC AATCGAAACAGTCCGAACCGAAAAGTGCAACGTCCAAAGCAAATGGTCTAAAACAGAAGGCTGTTTCTGGTGGTAATAAGAAGCCAAGTGCAAAATCTGA TGTCACAGAGAAGAAGATTGCTCCAGTTTGCATAGGACAGAAATCAACAGAATTACTTGGCGTGCAAGCAACTACAGTGACTAGTGAAACTGTTGACATG AAGGACAATATGGAGTTACCAAAATTGTCAGCGGAGAAGAATGTAGTTACTGAGGTTGGAAAGGCTTCATATGGTCTGTTGGAGGATATTTCTGGGGTGA TGATACATCCTACGGCAGGGTCACCGAATAAACAAAAGAACGTATCTGATGATCCTAAAGTAGAAGAAGAGAACGATGAGGTGAGAACTGAAGAGTCAGC TTTGCCACAGAGATCCCAGATTGAAATTCCCAGTACTCCCCCACCACCGGACATTGTAAACCCAGAACAGATTCACACAAGAAAGAAATGGAGCAGCGGC GAAACCTCTCCGAAAGGTTCGAAAGGGCTGCGAAGGCTCCTCTTTTTTGGAAAGAGAACTTGA
AA sequence Show only first row Show all	>Lus10043092 pacid=23168314 polypeptide=Lus10043092 locus=Lus10043092.g ID=Lus10043092.BGIv1.0 annot-version=v1.0 MDPRTLLDHALFQLTPTRTRCDLMVFAASGGASEKLASGLLQPFVSHLKTANDQICKGGYSIILRPSSSSPNSSTPWFTKATLQRFVRFVSTPEVLERFV TIETELEQIDSSVHSHEHYKSTVSSKDGVGDAASEESSKVHLQRALESRKAILRKEQAMAYARALVTGFELDSIYNLMSFADAFGASRLSEACINFTELC KKKNQDRRWLDEIVAMQAANLELPSLRNSGITLAGEESYPSQLSALRLNGSIEASDSATSIGSVDLSQDSSLPPPSATWPNHLPHYMHNFQGPVYQQMAP YQGYGYFPGNMQYDPNISHHLDSDDCRKKSSSRNQKKNHDDSTGSGSSSETELEQLKTDDRTDEHVRRKRHSKKSSRTVVIRNINYITSRRNGEKGNTSG EESEEDEFINGEALKQQVEEAVGSLGRQNKSAPRHHRKSQCDSDMNKKNEEEVNGKDQWSSFQSLLMKEDYADTYDIAPKSFQVDGESPKQRKQQMVAND SFVATSKDTTSEPQTRIQNFEGDINSRVVMKNKDGCYKDLLFPRRPEEKSDDHLLASLSGYSSESQIIKVQKGGGDCFIGTQMDKSVYKNGSEDINLFDI EHPCVVENKKDDVLADDSFMIQDRSFEDDGSRSILRTDISMVADVAEFAQCGNGGPDPSREKVKAVDSYEPDDLYMVLGRAPEAEKAVPSWTPEIDYEND ILSAETNRKGSTVEKTAVATNSGKEINKVKASGGNLGRRKSDTASKTRKPSLGSRTTLPKMKSEREEESRKKAEALKLERQKRIPARSSVGNSPVTSRRN STSNDGKSKKTVFRSSTIDRLATARTTAKVESTQSKQSEPKSATSKANGLKQKAVSGGNKKPSAKSDVTEKKIAPVCIGQKSTELLGVQATTVTSETVDM KDNMELPKLSAEKNVVTEVGKASYGLLEDISGVMIHPTAGSPNKQKNVSDDPKVEEENDEVRTEESALPQRSQIEIPSTPPPPDIVNPEQIHTRKKWSSG ETSPKGSKGLRRLLFFGKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	0	1
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	2.6	0.9544
AT4G38050			Xanthine/uracil permease famil...		Lus10025716 [exp]	2.8	0.9253
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	4.0	0.9354
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	4.2	0.9240
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	7.7	0.9151
AT5G42710			unknown protein		Lus10016315 [exp]	8.1	0.9358
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	8.4	0.9416
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	9.5	0.9068
AT1G61100			disease resistance protein (TI...		Lus10032661 [exp]	9.7	0.9338
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10018115 [exp]	9.9	0.8879

Compare expression of checked genes

Lus10043092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.