Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21760 313 / 5e-103 BGLU47 beta-glucosidase 47 (.1) AT1G61810 305 / 8e-100 BGLU45 beta-glucosidase 45 (.1.2.3) AT1G61820 295 / 5e-96 BGLU46 beta glucosidase 46 (.1.3) AT1G02850 250 / 5e-79 BGLU11 beta glucosidase 11 (.1.2.3.4.5) AT4G27830 249 / 2e-78 BGLU10 beta glucosidase 10 (.1) AT3G18070 249 / 2e-78 BGLU43 beta glucosidase 43 (.1.2) AT2G25630 245 / 4e-77 BGLU14 beta glucosidase 14 (.1) AT3G18080 244 / 1e-76 BGLU44 B-S glucosidase 44 (.1) AT1G26560 244 / 1e-76 BGLU40 beta glucosidase 40 (.1) AT5G42260 243 / 2e-76 BGLU12 beta glucosidase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032660 [exp] 586 / 0 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10032659 [exp] 400 / 4e-139 AT4G21760 300 / 2e-97 beta-glucosidase 47 (.1) Lus10007656 [exp] 324 / 1e-107 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 323 / 4e-107 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10007655 [exp] 305 / 1e-99 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10026057 [exp] 262 / 2e-83 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 253 / 7e-80 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 250 / 1e-78 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10009644 [exp] 249 / 2e-78 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403900 [exp] 428 / 4e-148 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.004G019700 [exp] 329 / 2e-109 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019500 [exp] 329 / 2e-109 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019300 [exp] 322 / 2e-106 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019800 [exp] 312 / 8e-103 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.004G019366 [exp] 307 / 1e-100 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.001G227200 [exp] 251 / 3e-79 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.015G041300 [exp] 249 / 1e-78 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.004G040700 [exp] 248 / 4e-78 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.012G049300 [exp] 243 / 4e-76 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10043093 pacid=23168306 polypeptide=Lus10043093 locus=Lus10043093.g ID=Lus10043093.BGIv1.0 annot-version=v1.0 ATGGCGCAGACAAGGAAGAGAACAGTCACCCGTCAGCTAGTTCTATTCCTCTGTTTTCTCTCTACTCATTGCCTTGAAGAATCAGATGAAGAAGCGAGAA GGTCACATTTCCCAAATGGATTTCTGTTTGGCACTGCAACTTCCGCATACCAGATTGAAGGAGCCTATCTTGAAGATGGAAAGGGTCTCAATAACTGGGA TGTTGTCTGTCACATTCCTGGAAACATTAAGAAGAATGACAATGGGGATATTGCTGACAATCATTACCATCTGTTCTTGGAAGATATTGAATTGATGCTT GCCCTAGGAGTTAACTCCTGTAGATTCTCTATCTCATGGACCAGAATTCTTCACAGAGGGAGATTTGGTGAAGTTAATCAAATGGGCATCCAGTTCTACC GAATTCTAGACCATCTTTTACTTAAGGGGATTGAACCATTTGTGACAATACATCACCATGACATCCCACAAGAACTTGAGGACAAATATGGGGGATGGGG ATCTTACCCACCATCTCATTGTTCTCCTCCTTTTGGAAACTGTTCAGCTGGTAATTCTGATTTGGAGCCTCTCATTGCTGTGCACAACATGATACTGTCA CATGCCAAAGCAGTCAAGATTTACCGCCAAGAGTTTCAAGAAAGCAAAGGTGGTTCAATTGGGATAGTTCTCTTTGCAATGTGGTATCAGCCCCTAAGAG AAAATGAAGTATTAGATCAGCAAGCTGTGAGTAGAGCACTGGCATTTGGTTCTCCTTGGCTACTAGATCCTTTGGTTTACGGGGACTATCCTTCTGAGAT GCGTCAGTACCTCGGAGCTACACTTCATAGTTTCACTGCCGAGCAAATGGATTATGTTAAAGGGAGCATAGATTTCATTGGCTTAAACCATTATTCGACA CTGTATGCAAAAGATTGGCTCCATTCATCTTGTCCTCCGGGAGGTTCAGATCATGCCATCAGAGATTTTCTGTCCAGGTCTTCTGCTCAAAGTGTTGGGT TTAGCTTGGTACCGGGGAGACTGCATGAAACTTTGATCAATAATGGAGTCGTAGATACAATGTAA
AA sequence Show only first row Show all	>Lus10043093 pacid=23168306 polypeptide=Lus10043093 locus=Lus10043093.g ID=Lus10043093.BGIv1.0 annot-version=v1.0 MAQTRKRTVTRQLVLFLCFLSTHCLEESDEEARRSHFPNGFLFGTATSAYQIEGAYLEDGKGLNNWDVVCHIPGNIKKNDNGDIADNHYHLFLEDIELML ALGVNSCRFSISWTRILHRGRFGEVNQMGIQFYRILDHLLLKGIEPFVTIHHHDIPQELEDKYGGWGSYPPSHCSPPFGNCSAGNSDLEPLIAVHNMILS HAKAVKIYRQEFQESKGGSIGIVLFAMWYQPLRENEVLDQQAVSRALAFGSPWLLDPLVYGDYPSEMRQYLGATLHSFTAEQMDYVKGSIDFIGLNHYST LYAKDWLHSSCPPGGSDHAIRDFLSRSSAQSVGFSLVPGRLHETLINNGVVDTM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10043093 [exp]	0	1
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10010737 [exp]	7.1	0.7819
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	7.9	0.7769
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	8.9	0.7323
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10035008 [exp]	10.2	0.6954
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10021919 [exp]	14.1	0.6872
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	20.6	0.7692
					Lus10022112 [exp]	22.4	0.6960
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	23.6	0.7344
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10036963 [exp]	24.8	0.7244
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10029149 [exp]	27.0	0.7175

Compare expression of checked genes

Lus10043093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.