Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60600 397 / 5e-138 ABC4 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032658 [exp] 652 / 0 AT1G60600 397 / 4e-136 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050900 [exp] 470 / 1e-166 AT1G60600 441 / 2e-154 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2) Potri.001G311400 [exp] 55 / 1e-09 AT1G60600 48 / 1e-07 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10043094 pacid=23168423 polypeptide=Lus10043094 locus=Lus10043094.g ID=Lus10043094.BGIv1.0 annot-version=v1.0 ATGAAGAAAAGATTCTATCGACGAGCCATTCCGGAGAGTAAATCAGGCTACGGTGTTAACGTGAAAGACGATGGAGATGTGACAAGGGGGACTTTGATAT GGAGAGCAATCAAATTACCAATTTATTCTGTTGCTTTGATTCCTCTAACGGTTGGTGGTGCTGCTGCTTATTTGCAGACTGGCATATTTTCTGCAAAGCG CTATTTCACTCTCTTGATTTCTTCAGTTCTAATCATAACATGGCTCAATCTAAGCAACGATGTATATGATTTTGATACAGGAGCTGATAAGAACAAGAAA GAATCAGTTGTTAACTTAGTTGGAAGCCGTTCAGGAGTCTTTATTGCAGCTTGCTTTTGCCTCATCACTGGTTTCGCTGGTCTGACATGGGCATCCTTGG GATCAAAAAGCATACGGGCAAATCTGTTATTGACTTGCGCGATCATCTGCGGTTACATATATCAGTGCCCTCCTTTTCGGCTAAGTTACCGTGGACTTGG TGAGCCCTTGTGCTTCGCAGCATTCGGTCCATTTGCCAGCACTGCTTTTTACTTATTGCTGCGAACCTCCAGTGAAGCACACAAGTTCCATTTAACGACG ACGGTTCTTTCTGCATCATTTCTTATTGGATTCACAACTACTTTAATACTTTTCTGTAGTCACTTCCACCAGGTCGAAGAAGATGAAGCTGTTGGTAAAA TATCACCTCTGGTTAGACTAGGGACAAAAAGAGGTTCAGTATTAGTTAAAGGCGCAGTTGTGACACTGTACTCTCTCTTGGTTGCTTTTGGGATAAGTGG AACTCTACCATCTACATGCATTGTTCTCGCTGCCTTGACGTTACCCATGGGGATTAAAGTGGTCAGATTCGTTGAGGAGAACCACATGGACAAGGGGAGA ATCTTTATGGCGAAATATTACTGCGTGAGGCTCCATGCCTTGTTTGGGGCGGCACTAACAGCAGGACTAGTGTTGGCTAGGAATCTCGCCAAAGGATACG TAGCTAGGCAGATAATATTCTCTTGA
AA sequence Show only first row Show all	>Lus10043094 pacid=23168423 polypeptide=Lus10043094 locus=Lus10043094.g ID=Lus10043094.BGIv1.0 annot-version=v1.0 MKKRFYRRAIPESKSGYGVNVKDDGDVTRGTLIWRAIKLPIYSVALIPLTVGGAAAYLQTGIFSAKRYFTLLISSVLIITWLNLSNDVYDFDTGADKNKK ESVVNLVGSRSGVFIAACFCLITGFAGLTWASLGSKSIRANLLLTCAIICGYIYQCPPFRLSYRGLGEPLCFAAFGPFASTAFYLLLRTSSEAHKFHLTT TVLSASFLIGFTTTLILFCSHFHQVEEDEAVGKISPLVRLGTKRGSVLVKGAVVTLYSLLVAFGISGTLPSTCIVLAALTLPMGIKVVRFVEENHMDKGR IFMAKYYCVRLHALFGAALTAGLVLARNLAKGYVARQIIFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10043094 [exp]	0	1
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	4.0	0.9641
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10004054 [exp]	4.9	0.9589
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	9.2	0.9557
AT5G22340			unknown protein		Lus10043400 [exp]	10.0	0.9538
AT3G62000			S-adenosyl-L-methionine-depend...		Lus10036339 [exp]	11.4	0.9122
AT4G02725			unknown protein		Lus10014675 [exp]	15.9	0.9476
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	16.3	0.9514
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	17.0	0.9504
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	19.8	0.9473
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10008075 [exp]	20.5	0.9334

Compare expression of checked genes

Lus10043094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.