Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15510 325 / 2e-109 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G61110 294 / 6e-98 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G52880 268 / 6e-88 NAC ATNAM, NAM, ANAC018, NARS2 NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04070 255 / 4e-82 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G69490 249 / 3e-81 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G77450 236 / 2e-76 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G01720 237 / 4e-76 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G63790 233 / 4e-74 NAC ANAC102 NAC domain containing protein 102 (.1) AT5G08790 230 / 2e-73 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G52890 228 / 2e-72 NAC ANAC019 NAC domain containing protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032657 [exp] 520 / 0 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10011215 [exp] 309 / 3e-103 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10018469 [exp] 308 / 7e-103 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10006547 [exp] 266 / 3e-86 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10003269 [exp] 258 / 6e-83 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10015076 [exp] 256 / 1e-82 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10023179 [exp] 255 / 3e-82 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10036773 [exp] 249 / 1e-80 AT1G69490 318 / 1e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10026496 [exp] 250 / 2e-80 AT1G61110 244 / 6e-79 NAC domain containing protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G123500 [exp] 357 / 3e-122 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.001G404400 [exp] 353 / 2e-120 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.011G046700 [exp] 339 / 3e-115 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 328 / 4e-111 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.013G054000 [exp] 265 / 4e-86 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.019G031400 [exp] 258 / 3e-83 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.004G049500 [exp] 252 / 4e-81 AT1G61110 232 / 4e-74 NAC domain containing protein 25 (.1) Potri.006G129400 [exp] 251 / 9e-81 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1) Potri.008G089000 [exp] 248 / 1e-80 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.011G058600 [exp] 248 / 7e-80 AT3G15510 227 / 6e-72 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10043095 pacid=23168032 polypeptide=Lus10043095 locus=Lus10043095.g ID=Lus10043095.BGIv1.0 annot-version=v1.0 ATGGAGAGCACAGACTCATCCACCGGCGCCTGCGGTGGAACCAGTAACCAGCCTAACCTACCGCCAGGATTCCGGTTCCATCCCACGGACGAAGAGCTAG TTGTTCACTACCTGAAGAAGAAGGCCAGCTCTGCTCCTCTCCCTGTCTCAATCATCGCTGAAGTTGATCTCTACAAGTTTGATCCGTGGGAATTACCCGC AAAGGCGACTTTTGGAGAGCACGAGTGGTACTTCTTCAGTCCAAGGGACAGGAAGTATCCGAACGGGGTGAGGCCCAATAGGGCAGCTACATCTGGTTAT TGGAAGGCGACGGGAACCGACAAACCGGTGTTGACCTCCGGCGGGACTCAGAAGGTCGGCGTGAAGAAGGCACTCGTTTTCTACGGCGGTAAGCCACCGA AAGGCGTGAAAACAAACTGGATTATGCATGAGTATCGTCTTGCTGACAACAAAGTCACCAACCGGCCCCCTGGCTTTGACCTTGGCAACAAAAAGAATTC CTTAAGGCTTGACGACTGGGTGTTGTGCCGAATATACAAGAAGAACAATAACCATAGATCGCTGGATCAGGAGAAGGAAGATTCGATGGAGGATATGATG CTTCCGATTCCTCCATCTTTACTGGTTTCCTCTAACAACCACCACCCAGCAGCAAGTAGGATTCATCAGCTGGGAAAAGGCGGCGGGAGTTATGGTGGTT TGTTGGACATAATGAACTCACCTCATCATCATCATGATCCAAGTTTGTTCCAAGGAATTGATCATCATCACCACACAACAAATAATTCATTCTTCTCCCA CTTAGCTTCATCCTCCTCTTCCTCATCCAGGCAACAACAACATCTTCAACTACCCACCAACAACATGCTGGCTCCTTCTCTAAAACGACCGTCGTCTCCG GCAGCGTCGCTCTTCTGGCCGCCCGTCGTCGTCGACGATCACGACTCCTCGTCCAGCAAGAGGTTTCACGATGACAATGGCGTTGGCAGCGGAGGTGATG GAACTAACGACGGCGGTACTTCTATCGCCTCTTTACTTAGCCAGCTGAGCCAGACGACACCCACTCAACAACAACAAGATTTGACAGAGCTCAGGACGGC GCCGTATCAGCAGCTTCCGGGGATGAATTGGTACTCCTGA
AA sequence Show only first row Show all	>Lus10043095 pacid=23168032 polypeptide=Lus10043095 locus=Lus10043095.g ID=Lus10043095.BGIv1.0 annot-version=v1.0 MESTDSSTGACGGTSNQPNLPPGFRFHPTDEELVVHYLKKKASSAPLPVSIIAEVDLYKFDPWELPAKATFGEHEWYFFSPRDRKYPNGVRPNRAATSGY WKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLADNKVTNRPPGFDLGNKKNSLRLDDWVLCRIYKKNNNHRSLDQEKEDSMEDMM LPIPPSLLVSSNNHHPAASRIHQLGKGGGSYGGLLDIMNSPHHHHDPSLFQGIDHHHHTTNNSFFSHLASSSSSSSRQQQHLQLPTNNMLAPSLKRPSSP AASLFWPPVVVDDHDSSSSKRFHDDNGVGSGGDGTNDGGTSIASLLSQLSQTTPTQQQQDLTELRTAPYQQLPGMNWYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10043095 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10018852 [exp]	5.2	0.8420
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	5.7	0.8225
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10043002 [exp]	9.5	0.7889
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10026054 [exp]	9.9	0.7965
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10010171 [exp]	9.9	0.8187
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10000556 [exp]	14.3	0.7392
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	17.5	0.7750
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	20.1	0.7761
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032118 [exp]	21.6	0.7969
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	22.0	0.8060

Compare expression of checked genes

Lus10043095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.