Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52870 488 / 1e-172 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 408 / 1e-141 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G14860 78 / 6e-16 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 76 / 3e-15 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G38870 69 / 8e-15 Serine protease inhibitor, potato inhibitor I-type family protein (.1) AT5G43140 72 / 5e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43580 54 / 3e-09 UPI UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) AT2G38900 53 / 6e-09 Serine protease inhibitor, potato inhibitor I-type family protein (.1.2) AT5G43570 53 / 1e-08 Serine protease inhibitor, potato inhibitor I-type family protein (.1) AT4G14305 54 / 2e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032655 [exp] 837 / 0 AT1G52870 499 / 3e-176 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10018568 [exp] 408 / 1e-140 AT4G03410 439 / 4e-155 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10039800 [exp] 404 / 7e-139 AT4G03410 434 / 1e-152 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10002118 [exp] 77 / 2e-15 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 77 / 2e-15 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10018783 [exp] 67 / 5e-14 AT2G38870 89 / 2e-25 Serine protease inhibitor, potato inhibitor I-type family protein (.1) Lus10014740 [exp] 66 / 2e-13 AT2G38870 77 / 2e-20 Serine protease inhibitor, potato inhibitor I-type family protein (.1) Lus10018700 [exp] 69 / 2e-12 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10018786 [exp] 61 / 6e-12 AT2G38870 93 / 6e-27 Serine protease inhibitor, potato inhibitor I-type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G123700 [exp] 549 / 0 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G404600 [exp] 532 / 0 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.019G103200 [exp] 402 / 4e-139 AT4G03410 413 / 2e-145 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.011G110400 [exp] 77 / 3e-17 AT5G43580 78 / 1e-20 UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.011G110100 [exp] 76 / 5e-17 AT5G43580 78 / 1e-20 UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.005G221000 [exp] 72 / 1e-15 AT5G43580 74 / 5e-19 UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.010G075600 [exp] 69 / 1e-14 AT5G43580 80 / 3e-21 UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.010G075200 [exp] 68 / 2e-14 AT2G38870 76 / 4e-20 Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.009G090600 [exp] 73 / 3e-14 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.010G075501 [exp] 68 / 3e-14 AT5G43580 77 / 2e-20 UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0367 [flax] [poplar] CI-2 PF00280 [flax] [poplar] potato_inhibit Potato inhibitor I family CL0367 [flax] [poplar] PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10043097 pacid=23168433 polypeptide=Lus10043097 locus=Lus10043097.g ID=Lus10043097.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCCACGCCATTTCTCCTCCTCGCAGCTTTCTCCCTCTTTCTAACCACAGAAAACCCATCTCAAAGAGCCTCTCAGGTTCTCAGATCCTGA CCAGCACCTGCCCGAAGCTCCCCCACAATTCGATCTCCCGGAGAAACAAGCATAAAAGCGACGGCGGCTGGGTGGTCAACTCGCTGCTCCAAGATGAGTT CGAAGTCATACCGGTGCAGAGCGAGGATTTCACGGACCGTCAAGAAGGTATGGCGGCGAGTCAAGTGGAGAGAGAAGGCATCGAATCGACGACTCAGGTC AGCGGCTTTGGAGCCAGAGACGGCCAGTTGTCGTTGGAAGGTTTCTCCTCTGTTTCCGCCTCTGTAGTTGGAGGCGACGGCGGAGAAGGTAGTAATCAGA GGGAGAATGAGCTCGAAATGGACCGCCTGATTGATCGGACAATTAATGCGATGATTGTTCTTGCTGCTAGCAGCTATGCTATCACAAAGTTGCTCACGAT CGACCATGATTACTGGCATGGATGGACCCTTGTGGAGATACTGAGATATGCTCCTCAGCACAATTGGACTGCATATGAGGAGGCTCTGAAGACAAACCCA GTTTTGGCAAAAATGTGTATCAGTGGAGTGGTATATTCATTGGGAGATTGGATTGCACAGTGTTTTGAAGGTAAACCAATGTTCGAGTTCGATCGCGCGC GGATGCTCAGATCAGGCCTTGTTGGTTTTACGTTGCATGGGTCTCTTTCACACTATTATTACCAATTCTGCGAGGAGCTTTTTCCATTTCAAGACTGGTG GGTGGTTCCAGTCAAGGTTGCCTTTGATCAAACTGCCTGGTCTGCAGTTTGGAATAGCATCTATTTCACAGTGTTGGGATTCTTGAGACTGGAGTCTCCT TTGACCATTTTCGCTGAATTAAGGAGCACATTCTTCCCCATGCTTACAGCAGGCTGGAAGCTGTGGCCATTTGCTCATGTAATAACATATGGTATGATCC CCGTAGAGCAAAGGCTTCTCTGGGTTGATTGCGTGGAGCTCATTTGGGTGACAATACTCTCAACTTATTCGAACGAAAAATCGGAAGGCAGGATACTGGA GGCACCCGTGGAAGCCGGTTCCAGCTCTACTTCTGCATCGATCACGCCCCATGAGAGTGCGTGGCCGGAGCTAGTTGGAAGCGACGGAGAGGAGGCGGTG GCGAAAATAACGGGGGACAATCCAACGGTGAAGATAGCCAGGACGTTCAGTGAAGGAGCTATGGTGACGGGGGACTTCCGGTGCGATAGGGTTCGGGTGT ATGTAGATAAGAATGGCACCGTCACTCGGGTCCCTCATATTGGTTAA
AA sequence Show only first row Show all	>Lus10043097 pacid=23168433 polypeptide=Lus10043097 locus=Lus10043097.g ID=Lus10043097.BGIv1.0 annot-version=v1.0 MASLHAISPPRSFLPLSNHRKPISKSLSGSQILTSTCPKLPHNSISRRNKHKSDGGWVVNSLLQDEFEVIPVQSEDFTDRQEGMAASQVEREGIESTTQV SGFGARDGQLSLEGFSSVSASVVGGDGGEGSNQRENELEMDRLIDRTINAMIVLAASSYAITKLLTIDHDYWHGWTLVEILRYAPQHNWTAYEEALKTNP VLAKMCISGVVYSLGDWIAQCFEGKPMFEFDRARMLRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPVKVAFDQTAWSAVWNSIYFTVLGFLRLESP LTIFAELRSTFFPMLTAGWKLWPFAHVITYGMIPVEQRLLWVDCVELIWVTILSTYSNEKSEGRILEAPVEAGSSSTSASITPHESAWPELVGSDGEEAV AKITGDNPTVKIARTFSEGAMVTGDFRCDRVRVYVDKNGTVTRVPHIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	0	1
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	1.0	0.9085
					Lus10029247 [exp]	5.7	0.8069
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	9.2	0.7856
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	9.5	0.7849
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	10.4	0.7904
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	10.6	0.7802
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	12.1	0.8106
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028328 [exp]	15.0	0.8408
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	17.4	0.7921
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	18.3	0.7672

Compare expression of checked genes

Lus10043097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.