Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17350 324 / 8e-111 unknown protein AT5G50290 132 / 4e-36 unknown protein AT1G10380 115 / 8e-30 Putative membrane lipoprotein (.1) AT1G11915 108 / 3e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042105 [exp] 135 / 3e-37 AT5G50290 366 / 9e-128 unknown protein Lus10001236 [exp] 135 / 4e-37 AT5G50290 368 / 2e-128 unknown protein Lus10037078 [exp] 119 / 2e-30 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036687 [exp] 99 / 8e-24 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 97 / 4e-23 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10038443 [exp] 97 / 7e-23 AT1G11915 365 / 2e-126 unknown protein Lus10036906 [exp] 92 / 2e-21 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037236 [exp] 81 / 3e-18 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1) Lus10023362 [exp] 79 / 3e-16 AT1G11915 360 / 2e-124 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152900 [exp] 400 / 5e-141 AT3G17350 339 / 4e-117 unknown protein Potri.008G099800 [exp] 399 / 2e-140 AT3G17350 332 / 2e-114 unknown protein Potri.015G078700 [exp] 139 / 1e-38 AT5G50290 387 / 4e-136 unknown protein Potri.008G095900 [exp] 114 / 2e-29 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 114 / 2e-29 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.011G007900 [exp] 109 / 3e-27 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 106 / 5e-26 AT1G11915 360 / 1e-124 unknown protein Potri.007G094800 [exp] 97 / 8e-23 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.010G040500 [exp] 94 / 8e-22 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.008G059900 [exp] 43 / 0.0002 AT5G02070 628 / 0.0 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043098 pacid=23168367 polypeptide=Lus10043098 locus=Lus10043098.g ID=Lus10043098.BGIv1.0 annot-version=v1.0 ATGAACTTCTTCTTAACCTCACCACTCCTCCTCCTCCTCCTTCTCCCCTTCTTCTTTCCCACTCCCACCATCTCCTCTGCTTTAACAACTACCCCCTGCA GATCATCCTGCGGAACCATCCCCATAAACTACCCGTTTGGAATCGACGACGGCTGCGGCGCCCCGCAGTTCCGTCACATGCTCAACTGCTCCTCCTCCTC TAACGGCGACCTCTTCTTCATCACCCCTTCTGGTGCATACAAAGTCCAGCACATCGACTACCCGAAAAAAACACTCCTCATCTACGACCCGTCAATGTCC ACGTGTTCAATCCTCCAGCCTCACCATGACTTCCTCATGACCGACATCCAGTCCGCCGTCATCCCTCCCACTTCCGACACCGTCTTCGCCCTCCTCAACT GCTCCGTCGACTCCCCTGTCCTCAACCATTACAAAAACCTCTGCTTTGACTTCTCCTCCCACTCCTGCGATGAGCTTTACTCCTCCTGCAATGCCTTCCG CGTTTTCCGCCTCCTCAATAACAACAACAACAACAACGGTACTGCGTTAGGTACGAGTGCTAACAACAGCGGCAGCTCATTAACGTCCCCCTCTTCTTCT CCGCCATGCTGCTTTACTGGGTACGATACTGTCAAGTACATGAGCATGAACATACTGGATTGTTCTCATTACACCACAGTGGTGAACACTGACGAGCTTA GTGGGATTGGGCCCCTGGATTGGGTCTACGGAATCAAGCTGTCGTATAGCTTTCCAGAGACCGGATGTGATCGATGCTCTCTTTCCGGTGGGACTTGTGG GTTTGATACTGAGACGGAAGGGATGCTCTGTTTGTGCTCTGTTTCCACTAACTCCACTAGACAGTGTGGTGCAGGAAGCATCACAGCAGCGGGTGTCAGG AGGAGCGGCCATTCATTGTTGACTTCTTGGATGCTTGGGTTCACACTTGCTGCTGCTGTTTTTATGCTTTTGAGGACTCCTCCTTGTTCTTAG
AA sequence Show only first row Show all	>Lus10043098 pacid=23168367 polypeptide=Lus10043098 locus=Lus10043098.g ID=Lus10043098.BGIv1.0 annot-version=v1.0 MNFFLTSPLLLLLLLPFFFPTPTISSALTTTPCRSSCGTIPINYPFGIDDGCGAPQFRHMLNCSSSSNGDLFFITPSGAYKVQHIDYPKKTLLIYDPSMS TCSILQPHHDFLMTDIQSAVIPPTSDTVFALLNCSVDSPVLNHYKNLCFDFSSHSCDELYSSCNAFRVFRLLNNNNNNNGTALGTSANNSGSSLTSPSSS PPCCFTGYDTVKYMSMNILDCSHYTTVVNTDELSGIGPLDWVYGIKLSYSFPETGCDRCSLSGGTCGFDTETEGMLCLCSVSTNSTRQCGAGSITAAGVR RSGHSLLTSWMLGFTLAAAVFMLLRTPPCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17350			unknown protein		Lus10043098 [exp]	0	1
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10017336 [exp]	1.0	0.8799
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041013 [exp]	2.0	0.8182
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	4.0	0.8471
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	9.9	0.8343
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	11.2	0.8136
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10022517 [exp]	14.5	0.8089
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	14.8	0.7774
					Lus10029272 [exp]	15.4	0.8067
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017138 [exp]	16.2	0.7924
AT2G32280			Protein of unknown function (D...		Lus10039706 [exp]	20.3	0.6916

Compare expression of checked genes

Lus10043098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.