Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17310 146 / 6e-38 DRM3, AtDRM3 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G14620 51 / 1e-06 DMT7, DRM2 domains rearranged methyltransferase 2 (.1) AT5G15380 50 / 2e-06 DRM1 domains rearranged methylase 1 (.1) AT5G38280 49 / 7e-06 PR5K PR5-like receptor kinase (.1) AT5G39020 44 / 0.0003 Malectin/receptor-like protein kinase family protein (.1) AT5G38260 42 / 0.0007 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032652 [exp] 433 / 5e-146 AT3G17310 479 / 5e-160 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007934 [exp] 156 / 1e-41 AT5G38260 273 / 3e-83 Protein kinase superfamily protein (.1) Lus10013472 [exp] 64 / 2e-11 AT5G38280 177 / 2e-51 PR5-like receptor kinase (.1) Lus10032136 [exp] 58 / 8e-09 AT5G14620 580 / 0.0 domains rearranged methyltransferase 2 (.1) Lus10014552 [exp] 53 / 3e-07 AT5G14620 581 / 0.0 domains rearranged methyltransferase 2 (.1) Lus10027013 [exp] 51 / 6e-07 AT5G38280 195 / 3e-58 PR5-like receptor kinase (.1) Lus10025554 [exp] 51 / 2e-06 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10022359 [exp] 50 / 2e-06 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 50 / 4e-06 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152200 [exp] 203 / 3e-58 AT3G17310 528 / 3e-179 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G118300 [exp] 72 / 2e-13 AT1G66920 316 / 1e-99 Protein kinase superfamily protein (.1.2) Potri.008G125500 [exp] 62 / 5e-10 AT1G67000 309 / 3e-94 Protein kinase superfamily protein (.1) Potri.010G120950 [exp] 50 / 3e-06 AT5G38260 371 / 3e-120 Protein kinase superfamily protein (.1) Potri.005G056700 [exp] 48 / 1e-05 AT5G60900 452 / 2e-148 receptor-like protein kinase 1 (.1) Potri.005G057000 [exp] 48 / 1e-05 AT5G60900 456 / 5e-150 receptor-like protein kinase 1 (.1) Potri.004G014512 [exp] 48 / 1e-05 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.004G014700 [exp] 48 / 1e-05 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.010G121350 [exp] 48 / 1e-05 AT5G38260 364 / 5e-118 Protein kinase superfamily protein (.1) Potri.017G117340 [exp] 48 / 1e-05 AT5G38260 456 / 9e-153 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043099 pacid=23168324 polypeptide=Lus10043099 locus=Lus10043099.g ID=Lus10043099.BGIv1.0 annot-version=v1.0 ATGGTCTACCCCGCGGTAAAAACTCATTCACCCAGCCATATATCCCTTCGAAATCTCAACCAGCCCACTTCTCCTCTGGAAGTCGTGAAGGCCACGCGCC GCCTTCATTCTATGCAGCTGCCTTCCGGCACCCGAACTCTTTCGGCACCATCTCGCGTCCTACCAGTTCCTCTCCCGCCACCAAGCCCTTTTTCCCCACT CCAAAATGGTACGCCCTCTCTAACTTTTTTGCTGCCGGATGAAAATTACCTTGCCGAGGTCCGTGATGCTGTTCAATCTTGTACGCAGGGCAATCCAAAG AATTACCCGAACGGCGGGAGCTCTTTGGATCCAGAACGCGACGGACTGTATGAGCCGAAGCCTGAGGTCTTGGATTTCATCTTCCCCTCCGACGCTGTCT ACTCTATGCAAGTTGGGGACTACACCGCAAGTTCATCTGGAAACCATGTACGTTCGCTTCTCACTGGGATGGGGTTCACACCTTCACTTGTTGATAAGGT GATTGAGGAAAACGGTAATGAGAACATGGATTTGCTGTTGGAGATTCTCGTGGAAAAATCTAAGTCAAGCACTCAGTCATCGGATTCTTTAGTGAACCTG TTTGACGACAAGGAGGAAGATGGACCTGCTGCATGTTCCAACATGCTGCCTCCACCTAAAGAGGAACCTGATGTATATACTGAAGTCGTGGATGAACGAA AAGAATCATTGCTAAGGATGAACTTCACTCTATCTGAAGTTGATTTCGCTATCAATAAGCTTGGTGACAATGCTTCAATAGGGGAATTAGTAGATTTCAT CAGTGCTTTCCAAATGGCTCGGCACGCAGATGAAGGCACGCATGACATGCCTCAAAATCTTGATCAGGAAAACAAGGACGATAATGATGAAACCTTGTTT GGGACCATGGAGAAAACACTTCAGTTGCTTGACATGGGTTTCTCTGAAAATGATATTTCACGTGCAATTGAGAAGTTCGCTTTGTGCCCCCCCGTAAGTG GGTGCTCCTCATTTTGCATCCATCTACTGTCTGCCTTCTCATTTTGGGGGTTCATCTTAGCTCCAGTAGTGATCGCAGCCTTCCTGATCCACAAGTGCAG AACATGTCCGAAGAGTTCTCCACCAGTGGAGATCATGAGGAAGAAGTTCGTCTCAAATTCGCTTCCCAGGAGGTACTCTTACTCCAATATTGAGGTAATG CCTGAACAATTCAAGCACGGATTAGGCCGTGGTAGGTTTGGAACCGTGTTCAAGGGTACGCTCCTCGAGAATGGCGGATTCGTTGCTGCAAAATGA
AA sequence Show only first row Show all	>Lus10043099 pacid=23168324 polypeptide=Lus10043099 locus=Lus10043099.g ID=Lus10043099.BGIv1.0 annot-version=v1.0 MVYPAVKTHSPSHISLRNLNQPTSPLEVVKATRRLHSMQLPSGTRTLSAPSRVLPVPLPPPSPFSPLQNGTPSLTFLLPDENYLAEVRDAVQSCTQGNPK NYPNGGSSLDPERDGLYEPKPEVLDFIFPSDAVYSMQVGDYTASSSGNHVRSLLTGMGFTPSLVDKVIEENGNENMDLLLEILVEKSKSSTQSSDSLVNL FDDKEEDGPAACSNMLPPPKEEPDVYTEVVDERKESLLRMNFTLSEVDFAINKLGDNASIGELVDFISAFQMARHADEGTHDMPQNLDQENKDDNDETLF GTMEKTLQLLDMGFSENDISRAIEKFALCPPVSGCSSFCIHLLSAFSFWGFILAPVVIAAFLIHKCRTCPKSSPPVEIMRKKFVSNSLPRRYSYSNIEVM PEQFKHGLGRGRFGTVFKGTLLENGGFVAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10043099 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	2.0	0.8663
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	8.1	0.8668
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10014697 [exp]	8.7	0.8574
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	9.2	0.8554
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	12.8	0.8607
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	17.7	0.7986
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	21.8	0.8244
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10004693 [exp]	28.3	0.7760
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	28.7	0.8528
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	29.6	0.8213

Compare expression of checked genes

Lus10043099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.