Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06440 576 / 0 Galactosyltransferase family protein (.1.2) AT1G26810 478 / 5e-162 GALT1 galactosyltransferase1 (.1) AT5G62620 303 / 4e-94 Galactosyltransferase family protein (.1.2) AT1G74800 300 / 4e-93 Galactosyltransferase family protein (.1) AT1G27120 290 / 4e-89 Galactosyltransferase family protein (.1) AT4G21060 274 / 6e-83 Galactosyltransferase family protein (.1.2) AT2G26100 69 / 3e-12 Galactosyltransferase family protein (.1) AT1G53290 64 / 1e-10 Galactosyltransferase family protein (.1) AT3G14960 63 / 1e-10 Galactosyltransferase family protein (.1) AT1G05170 55 / 1e-07 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032650 [exp] 1111 / 0 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10012822 [exp] 483 / 5e-164 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 482 / 1e-163 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 470 / 2e-160 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 464 / 3e-157 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10004256 [exp] 292 / 9e-90 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 286 / 2e-87 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 273 / 2e-82 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036686 [exp] 259 / 8e-80 AT5G62620 743 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G151600 [exp] 811 / 0 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 505 / 1e-172 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 483 / 3e-164 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.015G067600 [exp] 295 / 8e-91 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 285 / 1e-86 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 279 / 9e-85 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 278 / 2e-84 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 266 / 2e-80 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G228900 [exp] 72 / 2e-13 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 66 / 2e-11 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10043102 pacid=23168234 polypeptide=Lus10043102 locus=Lus10043102.g ID=Lus10043102.BGIv1.0 annot-version=v1.0 ATGAAACTGTTCAATGTAGCTTTCTCGTTATTCCTGATGAAGAAATGGTCAGGCGGGGTGGTGATTGTTGCTCTTGCATTCATATTCATCTTCAGTTACA CCCCCATGTCAACTTCAACGCAACAACAGCCACCACACAAGACTGGTGATAATAACAACAACCAGTCTGCTTATGATTTCTTCAGAACTCATCCACCACC ATCCAACAAAAATGACTCTCTTTCAAAGGGCAATGGCCAATTTGATTCTATGGTTGGACCTCCTCCACCGCCATCATCAAACAAGCCAGCGTTTCGAATT GTCGAAGAGCTCAGTGACTTGTATGCTTTGAACGTCTCCAAGGAAGAGTCGAAAGCATTCCTCGTGTGGCCCGAATTGCGTATGCTTTTGTCCAGGTCGG ATGCATTGCCCGAAACGGCACAGGGGATTAAGGAGGCTTCTATAGCTTGGAAGGAGCTGCTACCTTTAATAGAGGAGGAGAGAGCTGCTAAGCTTGTTAA CAGCGATAAGTCGAAGGACAAGAGCTGTCCTACTCTCTTCGAGATTGAACTCACCGGATCCAGACTTGAAGGAGAGACTCGTCCTTCGGTTATCATGCTC TATAAAGTGCGAATACCTGGTGAGAATATGACAGAGGGACCATTCATTGTTCAGAATTCTTGGACTAGAGACGGTGGCTGGGGCAATGAGGAAAGATGCC CCTCTCATGATTCTGCTAATGTTCTTGATGGACTCATCAGATGCAATGAAGAAGTAGTTGGAAGTACCAACCATAATGCAAGTCGTCCTGCTGGCGATGC AGCGGGTAATAGCTCCAGAGAAAGTGTTCATACCGATGCTAACTTACCGTTCGTTGAAAGAAATCTAGTCGCTGCTACATTATGGTTGGGACCAGAAGGA TTCCATATGACTGTCAATGGGAGGCATGAAACTTCTTTTCCATTTCGAGAGAAACTTGAACCATGGTCAGTAAGCAGAGTGAAAGTATCTGGGAGTTTCG ATGTCCTATCTGCATTAGCCAAAGGTTTGCCTGTTCCCGAAGATCACAAATTAGTTGCTGGTATTGAGCATCTGAAAGCTCCACCAGCCGGAAAGAAGAG ACTGGTGATGCTGGTCGTGGTCTTCTCCAGCGGAAATAACTTCCAGCGGAGAATGGCACTCAGGAAGACTTGGATGCAGTACGAAGCTGTACGTTCTGGG AAAGTGGCTCACAAGAAAGCTCAAGTGAATCTTGAGCTCTGGAAAGAAGCTCAAGCGTATGGAGATATACAACTGATGCCTTTTGTTGATTACTATAGCC TTATCAGTTTGAAAACGATTGCCATCTGCATAATGGGGGCCAAACTACTCCCTGCAAAGTACATCATGAAAACAGATGACGATGCATTTGTTAGGATTGA TGAAGTTCTCACAAGTCTCAAAGAAAAGCCAGTAAAGGGTCTCTTGTACGGTCTTATTTCCTACGATTCAGCACCCCACAGGGACAAAGACAGCAAATGG TACATCAGTGAGCAGGAATGGGCGCATGCTGCTTATCCTCCATGGGCACACGGTCCGGGTTACGTAATATCAAGAGATGTAGCCAAATTCATAGTCCAGG GCCATCAGCAAAGGGATCTCAAGCTTTTCAAACTTGAGGATGTGGCAATGGGGATATGGATTGATGAGCTGAAGAAAAAGGGGGAACAGGTGAATTACGC GAGTGACGACAGGTTCCACAACGCTGGGTGTGAACCCAATTACGTACTTGCCCATTACCAGAGTCCGCGGCTGGTACTTTGCCTTTGGGAGAAGTTGCAG AAGGAGCATCAGCCCGCCTGCTGCGAGTAA
AA sequence Show only first row Show all	>Lus10043102 pacid=23168234 polypeptide=Lus10043102 locus=Lus10043102.g ID=Lus10043102.BGIv1.0 annot-version=v1.0 MKLFNVAFSLFLMKKWSGGVVIVALAFIFIFSYTPMSTSTQQQPPHKTGDNNNNQSAYDFFRTHPPPSNKNDSLSKGNGQFDSMVGPPPPPSSNKPAFRI VEELSDLYALNVSKEESKAFLVWPELRMLLSRSDALPETAQGIKEASIAWKELLPLIEEERAAKLVNSDKSKDKSCPTLFEIELTGSRLEGETRPSVIML YKVRIPGENMTEGPFIVQNSWTRDGGWGNEERCPSHDSANVLDGLIRCNEEVVGSTNHNASRPAGDAAGNSSRESVHTDANLPFVERNLVAATLWLGPEG FHMTVNGRHETSFPFREKLEPWSVSRVKVSGSFDVLSALAKGLPVPEDHKLVAGIEHLKAPPAGKKRLVMLVVVFSSGNNFQRRMALRKTWMQYEAVRSG KVAHKKAQVNLELWKEAQAYGDIQLMPFVDYYSLISLKTIAICIMGAKLLPAKYIMKTDDDAFVRIDEVLTSLKEKPVKGLLYGLISYDSAPHRDKDSKW YISEQEWAHAAYPPWAHGPGYVISRDVAKFIVQGHQQRDLKLFKLEDVAMGIWIDELKKKGEQVNYASDDRFHNAGCEPNYVLAHYQSPRLVLCLWEKLQ KEHQPACCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06440			Galactosyltransferase family p...		Lus10043102 [exp]	0	1
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	1.0	0.8754
AT3G56160			Sodium Bile acid symporter fam...		Lus10043384 [exp]	2.8	0.8471
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	3.5	0.8206
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	4.6	0.8445
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	6.5	0.8200
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10032487 [exp]	7.3	0.8160
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	12.6	0.8344
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	14.5	0.8110
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	17.2	0.7521
AT1G54680			unknown protein		Lus10033821 [exp]	17.9	0.8303

Compare expression of checked genes

Lus10043102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.