Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48030 840 / 0 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 830 / 0 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G16950 236 / 6e-71 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 232 / 6e-69 dihydrolipoyl dehydrogenases (.1) AT3G24170 158 / 2e-42 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G54660 140 / 7e-36 ATGR2, EMB2360, GR glutathione reductase (.1) AT5G03630 47 / 3e-05 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT1G63940 45 / 9e-05 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G52880 44 / 0.0002 ATMDAR1 monodehydroascorbate reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032649 [exp] 944 / 0 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 892 / 0 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 890 / 0 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037741 [exp] 233 / 1e-69 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 231 / 8e-69 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10011734 [exp] 175 / 1e-48 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10018770 [exp] 153 / 2e-40 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 138 / 8e-35 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10000758 [exp] 135 / 2e-34 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G100800 [exp] 837 / 0 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 783 / 0 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G142100 [exp] 234 / 4e-70 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 231 / 4e-69 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.003G178200 [exp] 166 / 1e-45 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.001G050000 [exp] 166 / 3e-45 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.015G037800 [exp] 135 / 5e-34 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.001G099600 [exp] 48 / 2e-05 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.006G114800 [exp] 44 / 0.0003 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0608 [flax] [poplar] Reductase_C PF02852 [flax] [poplar] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10043103 pacid=23168381 polypeptide=Lus10043103 locus=Lus10043103.g ID=Lus10043103.BGIv1.0 annot-version=v1.0 ATGGCGATGGCAAGCTTCGCGAGGAGAAAGGCTTACCTTCTCACCAGGAACTTCTCCAATTCCAACCCCGACGCCCTCCGCTTCTCTGTCTCCCTCACCC GCGGCTTCGCTTCCTCCTCCGGATCTGATGACAACGACGTCGTCGTCATCGGCGGGGGTCCCGGCGGTTACGTCGCAGCCATCAAGGCAGCCCAGCTCGG CCTCAAAACCACCTGCATCGAGAAGCGTGGCACCCTCGGCGGAACCTGTCTCAACGTCGGGTGCATCCCTTCCAAGGCACTTCTCCACTCATCCCACATG TTCCATGAAGCACAACACTCGTTTGCCAACCATGGCGTTAAGATTTCTTCCGTTGAGGTTGATTTGCCGGCCATGATGGGTCAAAAGGACAAAGCAGTAG CAAATCTTACCAAGGGTATTGAAGGTTTGTTCAAGAAGAACAAGGTGAACTACGTCAAGGGTTACGGAAAGTTTGTTTCGCCTAATGAAATATTGGTTGA TACCATCGATGGAGGTACCACTGTTGTAAAAGGCAAGAACATCATCGTAGCCACCGGTTCTGATGTGAAGACATTGCCCGGGATCACCATCGACGAGGAG AAGATTGTTTCGTCTACCGGTGCTTTGGCTTTGAAAGAAATCCCCAAGAAGCTTATAGTTATTGGGGCAGGGTACATTGGGCTTGAGATGGGTTCCGTCT GGTGCCGCCTTGGTTCTGAAGTCACTGTTGTGGAGTTCGGACCAGATATCGTCCCGGCCATGGATGGGGAAGTTCGCAAGCAATTTCAACGTTCCTTAGA GAAGCAGAAGATGAAATTCATGCTCAAGACTAAGGTGGTGGGAGTTGATAGCTCTGGAGATGGTGTGAAGTTGACTCTAGAGCCTGCTTCTGGTGGTGAT CAGACAATCCTTGAGGCGGATGTGGTTCTAGTCTCTGCTGGAAGGGTCCCATTTACATCCGGTCTTGGACTCGAAGAGATCGGTGTGGAAACGGATAAGG GCGGACGGATCTTAGTTAATGAGAAGTTCGAAACAAACATAAAAGGTGTGTTCGGTGTCGGAGATGTGATTCCGGGACCAATGTTGGCACACAAGGCAGA AGAGGATGGGGTTGCTTGTATCGAATTCATAGCCGGAATTCACGGCCATGTGGATTATGATAAGGTTCCGGGAGTGGTGTATACTCACCCGGAGGTTGCA TCGGTTGGTAAGACTGAAGAGCAGGTGAAAGCCCTCGGCGTCGAGTACCGGGTAGGGAAGTTCCCTTTCATGGCGAACAGCCGCGCTAAAGCAATAGATG ATGCTGAAGGGATAGTTAAGGTGTTGACTGAGAAAGAGACTGACAAGATATTAGGAGTTCATATCATGGCACCAAATGCAGGAGAGCTCATTCACGAGGC GGCATTGGCGATTAACTATGATGCTTCGAGCGAGGATATAGCTCGTATCTGCCATGCGCATCCAACAATGAGTGAGGCGTTGAAGGAGGCTGCCATGGCC GCCCATGACAAGCCTATTCACATTTGA
AA sequence Show only first row Show all	>Lus10043103 pacid=23168381 polypeptide=Lus10043103 locus=Lus10043103.g ID=Lus10043103.BGIv1.0 annot-version=v1.0 MAMASFARRKAYLLTRNFSNSNPDALRFSVSLTRGFASSSGSDDNDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHM FHEAQHSFANHGVKISSVEVDLPAMMGQKDKAVANLTKGIEGLFKKNKVNYVKGYGKFVSPNEILVDTIDGGTTVVKGKNIIVATGSDVKTLPGITIDEE KIVSSTGALALKEIPKKLIVIGAGYIGLEMGSVWCRLGSEVTVVEFGPDIVPAMDGEVRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLTLEPASGGD QTILEADVVLVSAGRVPFTSGLGLEEIGVETDKGGRILVNEKFETNIKGVFGVGDVIPGPMLAHKAEEDGVACIEFIAGIHGHVDYDKVPGVVYTHPEVA SVGKTEEQVKALGVEYRVGKFPFMANSRAKAIDDAEGIVKVLTEKETDKILGVHIMAPNAGELIHEAALAINYDASSEDIARICHAHPTMSEALKEAAMA AHDKPIHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	0	1
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	1.4	0.9512
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	2.8	0.9402
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031167 [exp]	3.5	0.9229
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	4.5	0.9201
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	6.3	0.8998
AT2G18840			Integral membrane Yip1 family ...		Lus10006966 [exp]	6.3	0.9191
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	7.7	0.9187
AT5G57460			unknown protein		Lus10028963 [exp]	8.8	0.9159
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	10.6	0.8870
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	11.0	0.8823

Compare expression of checked genes

Lus10043103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.