Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55100 358 / 5e-110 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) AT1G14650 50 / 7e-06 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032646 [exp] 1138 / 0 AT5G55100 499 / 3e-164 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10025704 [exp] 59 / 7e-09 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10035958 [exp] 57 / 5e-08 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015391 [exp] 47 / 4e-06 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10013966 [exp] 49 / 2e-05 AT1G14650 672 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356800 [exp] 506 / 5e-165 AT5G55100 420 / 6e-133 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Potri.007G070700 [exp] 53 / 1e-06 AT1G14650 810 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.005G094600 [exp] 49 / 1e-05 AT1G14650 814 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01805 [flax] [poplar] Surp Surp module PF09750 [flax] [poplar] DRY_EERY Alternative splicing regulator
Representative CDS sequence Show only first row Show all	>Lus10043105 pacid=23168076 polypeptide=Lus10043105 locus=Lus10043105.g ID=Lus10043105.BGIv1.0 annot-version=v1.0 ATGGATCTGGAAGTTGTTGGCAGGCACGCCCTTCTCTTCGATGACGATGCTATGGCCGCGTTCACGAACTCCAGGGACGCACTAGTCGAATGGAACTCTC TGTCAATCGACCGTTATGATGTCCGCCATCTCCTCACCGGCCCTCTTCCATCTCGTGTTCGCCGCAGACACCGGCCAGACGATCCTCTCGAATCCGAGCT CGATCACGAGCGGTATCTGGATTTGCTGTCGAGTCCTGATGAACAAGACATCGAAAATGACGCAAAATTGGCCAATGATGGTGGCTACAATGCAGTGGGA TTTTCATATGGGGAGTCCAGTGCATCTGTCGACCCAAAGAATCTAGATGCTGATTCTTGTTTTCACCCTCCATTCTCAGTGCCTGAACATTTGATTCAGA AACTGGTTACCATGTCTAAGTTTCAGATGCTCGGAGCAGGAAATGGACTTCTTCAAGGTTATCACTCACAGGCTCCTTGTCTTCTTTTGATGTCTCGACT CTTGACAAGGGGCCACAATGGTGGGATTAGGCCTCCAACTGAAAAGCTGCATCAGATTATCGCAAGGACTGCCATGTTTGTGAGCGCGCATGGGGCCCAG TCAGAAATTGTTTTGAGAGTTAAACAAGGAGGCAATCCATCATTTGGCTTCCTGATGCCTGATCATTATCTTCACCCATACTTTAGGTTTCTTATTGATC ACCAAGAACTTCTGAAGTCTGACATCGATGGGAAATCAGCTGAAGACGAGAATAACTCTAGGGCTGGTCTTGAAGAGGCTGGTGGAGCTCTGTCGCTGCT TGGTACTGTCTATGACTCCGGGGAGGATGAAGAAATTGCTTCTGGGAATACTTTGTCGCCTAAGAAAGGCAATCTTCAAAAGGCTGTTGGTGCAGATAAA TCCATAACTTCTGAAGTATTACAAGAACCTGGTTGTCCTGTAATCCCTGCCACAAGAGATGAAACAGTTATCAAAAATCATGTTTCTTCTTTGAAAGAAA CCCCTGTGGTAATAAGAAAAGGCCATAGCATTAACAAAATTAAAGCAGGAACTGTTACTGGGTTGAAAAAAGACTCTGGTTCTTCAGTGCCCGTTCCTTC AATAGACGAGAAACTACAGTCTTCTCATTTAAGTGATCCTACAAAGACTGAAATTCCTATACTGCAGCCTCCATCTGATATGAAGAGGGTAGTTGAGAAG ATTGTTGAGTTCATTCTCCGAAATGGGAAAGAATTCGAAGCAGTTCTTGTTCGGCAGGATGCTAACTACAAGAGATTTCCGTTCCTTTTGCCTTCAAACC AGTATCATCCATACTACCTAAAGGCTCTTCAAAATGCTCAAGAGCCACGATTGGATTCTCAGAGCTACAATTCTGAGAAGCATGTTTCATCTGGTGTTTC CACAGATAAGATAACTTCGAGCAAAGAAAGTGATTCCTCGTCTATTCTCTCTGACGTACCTTATGATTCAGATAGGAAAGAGAAATTTAAAATGGTGATT GGAAAGTCCAAGAAAGAAGAAACAGATACAAGTTCAAAACCCTCTCAGTCACAAGTTGGAGTCAGTATGGATGCAGAAGCGGTGGCTGCTATTTTGCAAG CTGCCAGAAGAGGCATTAGGAATCCTAACCTGGAAATAGTTGCTAAGAGTTCTCGTATTAGTAGTGACGGTGGTGAGTCATCTAGTTTGAATAGCCTTCT TTCATCTCGACCTCCAACTTCAACCCGAAAATTGGCTAATGATGTAGAGCCTGGTGTTTCCGTGTCTCTAGCTAAGGCTACTGCAAAAAATGCTGCAATT GCTGCAGCAAATGAAGCTGATTCCTCTGAAGCAAGCCTGACAAGAGAACAGAAGCTTAAAGCTGAAAGGTTGAGACGAGCAAAGATGTTTGCTGCAATGA TAAAAAGTGGAGCAGCTCCGTTGAAAAGTGAACCAGTGCGAGGTCTGTCCGTCGATCCACCTGTTTCTGGTTTATCAAGATCAGGAGGCTCGGCCGCTAA TATTGTGGAAAGAGAAAAGGAAGGAAGTCCGGTCCCTAAGAATGTTGGAAGTCATGAGGATAGAGAACTAGTTGATGCATCCAATGATAGACGATCCAAG AGGAAGTACCGTGACAAATCCGAGAAGGTTGAAGAAGACAAGGAAGATGTTAGAGAAGACGGAGATTCTAAGCACTCAAAGAAGAAGAAGAGGTCCCACG GCTCGTCACGTCATAGTAGGGAAAGTAGTAGGAAGCATAAAAGAAAGCATTCATCTTCAAAGGACAGAGATTCACGAGGCCGACACAAGTTTGAAGGCAG CTCGGAAGATGAGCAAGAGTGCTCAATGAATCATCACCCCAACTCTTCCGAGGATGAATATAGGCATTCTAGACGTAAGCACAAGAAAGACATGTCTTCT AAAGACGAGCAAGATGAGAAGTATAGGAGGCACTCTCGCTCCAGAAGGCGCACGGATGATACTTGCTCTGATGATGAGCATTCTCGGCACAAGAAGCTTG ATCGGGCGTCAAATAGACATAAACAAGAGGATGATAATAGTGGTGATGAAAATGATCATAAGCCTATTAACAATGGTGTGCGTGAAGGAAGATTGGGAGA TGATGGTGATAAGATAGAGAGAGGGGTGGAGGTTGGAGGAGGTCGGGACTCCATTGATGTTTCTGATGACCTTAGGGCTAAAGTTCGTGCAATGTTGGCA ACCATCTAA
AA sequence Show only first row Show all	>Lus10043105 pacid=23168076 polypeptide=Lus10043105 locus=Lus10043105.g ID=Lus10043105.BGIv1.0 annot-version=v1.0 MDLEVVGRHALLFDDDAMAAFTNSRDALVEWNSLSIDRYDVRHLLTGPLPSRVRRRHRPDDPLESELDHERYLDLLSSPDEQDIENDAKLANDGGYNAVG FSYGESSASVDPKNLDADSCFHPPFSVPEHLIQKLVTMSKFQMLGAGNGLLQGYHSQAPCLLLMSRLLTRGHNGGIRPPTEKLHQIIARTAMFVSAHGAQ SEIVLRVKQGGNPSFGFLMPDHYLHPYFRFLIDHQELLKSDIDGKSAEDENNSRAGLEEAGGALSLLGTVYDSGEDEEIASGNTLSPKKGNLQKAVGADK SITSEVLQEPGCPVIPATRDETVIKNHVSSLKETPVVIRKGHSINKIKAGTVTGLKKDSGSSVPVPSIDEKLQSSHLSDPTKTEIPILQPPSDMKRVVEK IVEFILRNGKEFEAVLVRQDANYKRFPFLLPSNQYHPYYLKALQNAQEPRLDSQSYNSEKHVSSGVSTDKITSSKESDSSSILSDVPYDSDRKEKFKMVI GKSKKEETDTSSKPSQSQVGVSMDAEAVAAILQAARRGIRNPNLEIVAKSSRISSDGGESSSLNSLLSSRPPTSTRKLANDVEPGVSVSLAKATAKNAAI AAANEADSSEASLTREQKLKAERLRRAKMFAAMIKSGAAPLKSEPVRGLSVDPPVSGLSRSGGSAANIVEREKEGSPVPKNVGSHEDRELVDASNDRRSK RKYRDKSEKVEEDKEDVREDGDSKHSKKKKRSHGSSRHSRESSRKHKRKHSSSKDRDSRGRHKFEGSSEDEQECSMNHHPNSSEDEYRHSRRKHKKDMSS KDEQDEKYRRHSRSRRRTDDTCSDDEHSRHKKLDRASNRHKQEDDNSGDENDHKPINNGVREGRLGDDGDKIERGVEVGGGRDSIDVSDDLRAKVRAMLA TI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	0	1
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	1.7	0.8897
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	2.0	0.8998
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	2.0	0.9062
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	2.2	0.8766
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Lus10006088 [exp]	4.0	0.8594
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	6.0	0.8585
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	7.9	0.8662
AT2G34930			disease resistance family prot...		Lus10002755 [exp]	9.4	0.8812
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	11.0	0.8532
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10034963 [exp]	12.6	0.7955

Compare expression of checked genes

Lus10043105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.