Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27000 319 / 1e-105 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54900 305 / 3e-100 ATRBP45A RNA-binding protein 45A (.1) AT1G11650 281 / 8e-91 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 257 / 3e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 241 / 5e-75 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 239 / 5e-74 ATRBP47A RNA-binding protein 47A (.1) AT1G47490 224 / 8e-70 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 227 / 2e-69 ATRBP47C' RNA-binding protein 47C' (.1) AT3G14100 106 / 7e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17370 105 / 8e-25 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018345 [exp] 297 / 3e-97 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 276 / 6e-89 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10031277 [exp] 263 / 1e-83 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 263 / 2e-83 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021754 [exp] 258 / 2e-81 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10012071 [exp] 254 / 3e-81 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10019889 [exp] 242 / 1e-76 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10014029 [exp] 242 / 2e-76 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10027911 [exp] 228 / 1e-71 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138400 [exp] 371 / 4e-126 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 367 / 4e-124 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G017200 [exp] 301 / 1e-98 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G143400 [exp] 274 / 8e-88 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 272 / 7e-87 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 270 / 3e-86 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 268 / 2e-85 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G128100 [exp] 259 / 7e-82 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.006G139300 [exp] 105 / 1e-24 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 103 / 6e-24 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10043106 pacid=23167913 polypeptide=Lus10043106 locus=Lus10043106.g ID=Lus10043106.BGIv1.0 annot-version=v1.0 ATGATGCAGCAGCCGGGAGCTGGGGGCGTAGCGGATCCGCAGTATCAGCAGCAACAACAACAGCAGTGGATGATGATGCAGCAACAACAGCAGACGCCGG TTCCTCCTCCGGCTAATTGGATTCCTCCACCTGTCCCACCGCCAACACAGTATGGTGTTACCCAGAGCCCTGGTGCTGGTGGGGGTTCAGGTGACGTTAA GTCGTTGTGGATCGGAGATTTGCAACCGTGGATGGACGAGAACTACCTTACCAACACCTTTTCTGGCACTGGAGAGGTAGTTTCGGCCAAGGTTATTCGT AATAAGCTAACAAATGTTCCGGAAGGATATGGCTTTATTGAGTTTGTCAGTCGTACAGCAGCAGAAAGGATCCTGCAGACTTACAACGGAACACCAATGC CAAATGCTGAACAGAATTTCCGGTTAAATTGGGCTACTCTGGGTGCTGGCGAGAGAAGGCAGGATGATGGCTCGGATTTTACTGTTTTTGTTGGAGATTT GGCTGCTGATGTGAATGATTACCTTCTTCAAGAGACATTTAAGACTGTATATCCATCTGTGAAAGGAGCGAAAGTTGTCACAGACAGGGTAACTGGACGG TCTAAGGGTTATGGGTTTGTGAGGTTTGGTGATGAGGGTGAACAAAGGCGTGCAATGGTTGAGATGAATGGTCAATACTGTTCTACTAGACCCATGCGAA TTGGTCCTGCTGCTTCAAAGAAACCTGCTGCCCAGCAATTTCAGACTGCAGCTACCTACCAGAATGTTCAGGTTCAAGGTGGGCAGGGTGAGAGCGATCC AAATAATACAACACAAGCACTACTAATGTTGAATGGAACACCGCTAGCAGGACAGAGTATCAGGCTATCTTGGGGACGTAGTCCTTCAAACAAGCAGGCT CAACCAGATCAAAGCCAGTATGGTGGATATTATGGATATGCTCAAGGTTATGATGCATATGGGTACGCAGCTGCTCCACAAGACCCTAACATGTACTATG GAGGGTACCCTGGATACGCAGGAAACTACCAGCAGGCAGGAGGTTATCAACAGCCGCCACAGCAGGTTTACCAGCAGCAGCCACCTCAGATTCGAAAGTG GCGTCGGAGGGAGCTTGGCCATGCCGTGAAAATTCACTCAGGGGTTGTGTGGAGTGGAGGTGGGGGCTATCGTATTGTTCTGCTACTGAGGATGGGAGGA GCTGTAATGCGTCGCGAGAAGCCTCAAATGGGTTGTTTGATTAACATACATGCTTGCTTGCTTGCTTGTGGATTATTTCATCCTTCCATTTCTTCTTCAT TCGATTTCATGGAATCTCTCTTTTCGGATGCATTACCTCTCAAGAGTTGA
AA sequence Show only first row Show all	>Lus10043106 pacid=23167913 polypeptide=Lus10043106 locus=Lus10043106.g ID=Lus10043106.BGIv1.0 annot-version=v1.0 MMQQPGAGGVADPQYQQQQQQQWMMMQQQQQTPVPPPANWIPPPVPPPTQYGVTQSPGAGGGSGDVKSLWIGDLQPWMDENYLTNTFSGTGEVVSAKVIR NKLTNVPEGYGFIEFVSRTAAERILQTYNGTPMPNAEQNFRLNWATLGAGERRQDDGSDFTVFVGDLAADVNDYLLQETFKTVYPSVKGAKVVTDRVTGR SKGYGFVRFGDEGEQRRAMVEMNGQYCSTRPMRIGPAASKKPAAQQFQTAATYQNVQVQGGQGESDPNNTTQALLMLNGTPLAGQSIRLSWGRSPSNKQA QPDQSQYGGYYGYAQGYDAYGYAAAPQDPNMYYGGYPGYAGNYQQAGGYQQPPQQVYQQQPPQIRKWRRRELGHAVKIHSGVVWSGGGGYRIVLLLRMGG AVMRREKPQMGCLINIHACLLACGLFHPSISSSFDFMESLFSDALPLKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10043106 [exp]	0	1
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10033545 [exp]	3.7	0.8383
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004607 [exp]	4.0	0.8781
AT3G17611		ATRBL14	RHOMBOID-like protein 14 (.1.2...		Lus10032095 [exp]	5.3	0.8218
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027158 [exp]	5.5	0.8695
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10032164 [exp]	6.5	0.8069
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	6.6	0.8794
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	9.2	0.8592
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	11.5	0.8407
AT4G12710			ARM repeat superfamily protein...		Lus10041090 [exp]	13.0	0.8343
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	13.6	0.8255

Compare expression of checked genes

Lus10043106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.