Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54970 59 / 6e-12 unknown protein AT4G26960 58 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032643 [exp] 185 / 2e-61 AT5G54970 59 / 7e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052300 [exp] 52 / 2e-09 AT5G54970 60 / 2e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043108 pacid=23168052 polypeptide=Lus10043108 locus=Lus10043108.g ID=Lus10043108.BGIv1.0 annot-version=v1.0 ATGGTGGCCCCTTCCAGATCTCCCAACCAATCCCACTGTTGCTTCCACCGCTACCTCAAGCCGGGAGCCCTCGCCCGTCTCAGAGACTCCAGAATCGGCG CCGCCAGATCTCTCCAACCCAAGAAGTCCCTTCCTCCGTCTTCTATTCCCAATTCCAATCTTGAAGCCCCTATTCAATCTGCTGCCGATGATGATGATGA TATTCCCCGCCTTTTGGCCAAGCTGTACAGACCCCAATCCCTAAACAGGAAGAGACTCGTCGCCGCTAGATCTGTTCTGTTCGCTGGGTTGCCTTCTCCT TCCAATCCGGCGTTGGATCTGACGAATCGAGGCGATGGTGGTATCAGTCATAGCAATAGTAATAATGGGTCTACGATGGCTGCGTTGAATAGCGATGCAG TTGTTGTCGCTCATTGA
AA sequence Show only first row Show all	>Lus10043108 pacid=23168052 polypeptide=Lus10043108 locus=Lus10043108.g ID=Lus10043108.BGIv1.0 annot-version=v1.0 MVAPSRSPNQSHCCFHRYLKPGALARLRDSRIGAARSLQPKKSLPPSSIPNSNLEAPIQSAADDDDDIPRLLAKLYRPQSLNRKRLVAARSVLFAGLPSP SNPALDLTNRGDGGISHSNSNNGSTMAALNSDAVVVAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54970			unknown protein		Lus10043108 [exp]	0	1
AT4G28230			unknown protein		Lus10018539 [exp]	4.5	0.9221
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	5.0	0.9290
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10033417 [exp]	5.5	0.9107
AT4G28310			unknown protein		Lus10031649 [exp]	7.7	0.9018
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	8.0	0.9234
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10026270 [exp]	9.5	0.9126
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10015267 [exp]	13.0	0.9175
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	15.4	0.9234
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10009836 [exp]	15.7	0.9147
AT4G28310			unknown protein		Lus10018597 [exp]	16.2	0.8941

Compare expression of checked genes

Lus10043108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.