Plant FIBer expression Database

Lus10043109 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50710 434 / 5e-151 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032639
[exp]
648 / 0 AT1G50710 522 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G090800
[exp]
474 / 9e-167 AT1G50710 530 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10043109 pacid=23168422 polypeptide=Lus10043109 locus=Lus10043109.g ID=Lus10043109.BGIv1.0 annot-version=v1.0
ATGGTGAAGGGGCTGCAAGGGGGAGGGACCCATAACCTGCCGCCGGATGTGGCGCAGGTGATGGATCAGTTGGAGCGTCACTGCCTGGCTCCTGATGGAT
CTCTCGTCTCCAAATCCGTCTACTACGACCTTCAACTTGCAAGAGAAGAGATGGCTAGAGAAAGACTACGTTACCTCGAAGCTATGGCAATTTACGGCGA
AGCAACTGCTATGGTGGAAGAGTATCAACAAGCTGTGTCAACCCCTACTCTTGGAGGTATTAGAGACGTCCTGTACCCGCAAATTAACTTGAAGAGCCAC
TCTCAGGTTTACGAGACTCTAGAGCATCGGTTGGTTGTCGCAGAAGCAGCTCAGAAACTGAGGCTTCCTCTTATATCAAAAGATGGTGAGGTTCACGAGG
AAGAAATAGAAAAATGGAGTGTGATGTCACGAAGCTCCCTAGATAGTACCAGTACCAGTGCCACAATCAGCTCAAGCTCTAATCCCTTGCATTATCCAAA
TAGTAGTACTACAAACAACGCTGCAAGTGTAATGAGTAGTTTTTATCCCAGCGTTAGTGATTCTGTGGATCCTGGCGTTGGTGGCTTAGCCAATCAATAT
CTCGGTATTAGCCCTGCTTATCTATGGCAAACCCAGCTTCAACAAATGCCATTAATGATGGACATGGCTGAATACCAGATGTTTTTGTCCTGTGAGATTG
AGACTCGTCTAAAGGATAAATGTGATAAGTTAGCTGATTCCTTTGTTGATGATATTGATTCTGCATCTTCTAATCCAAATTCAACTGCTTGGCTACCAGA
GAGTGAACTGTTTTTTGTGAAGGTCTTAGAGCAGATCCTTGGGATACTCATTAAGCTTGTCAAAGATCTGAAGTTGCAGCACCAACACAAATATGATGAG
CTGCAAAAGACTTGGTTATGTAAGAGGTGCGAGACAATGAAGGCCAAACTAAGGGTTCTGGAGCATATTCTGCTGATCGAGACTTATACTCAAGAGTCAA
TACCAGCACTCCACAAAATAAGGAAATACCTGATAGAAGCTACTGAAAAGGCTACTCTCGAATATAACAAAGCGGCCACACGCCTTAACGAGTATCTAGG
CGTGGATCCCCAATTCGACATGATTGCAAGAGAATACCAGGAGATAGTAGGGAAATTGCGAGATTTGCAATGGGCAATCGGTGAAGTTGAGAATGACGTG
AACCAAAGCAAGTAA
AA sequence
>Lus10043109 pacid=23168422 polypeptide=Lus10043109 locus=Lus10043109.g ID=Lus10043109.BGIv1.0 annot-version=v1.0
MVKGLQGGGTHNLPPDVAQVMDQLERHCLAPDGSLVSKSVYYDLQLAREEMARERLRYLEAMAIYGEATAMVEEYQQAVSTPTLGGIRDVLYPQINLKSH
SQVYETLEHRLVVAEAAQKLRLPLISKDGEVHEEEIEKWSVMSRSSLDSTSTSATISSSSNPLHYPNSSTTNNAASVMSSFYPSVSDSVDPGVGGLANQY
LGISPAYLWQTQLQQMPLMMDMAEYQMFLSCEIETRLKDKCDKLADSFVDDIDSASSNPNSTAWLPESELFFVKVLEQILGILIKLVKDLKLQHQHKYDE
LQKTWLCKRCETMKAKLRVLEHILLIETYTQESIPALHKIRKYLIEATEKATLEYNKAATRLNEYLGVDPQFDMIAREYQEIVGKLRDLQWAIGEVENDV
NQSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G50710 unknown protein Lus10043109
[exp]
0 1
AT3G07140 GPI transamidase component Gpi... Lus10025918
[exp]
3.5 0.8911
AT1G09000 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NP... Lus10015185
[exp]
3.6 0.8594
AT5G42080 RSW9, DRP1A, AG... RADIAL SWELLING 9, DYNAMIN-REL... Lus10001820
[exp]
6.5 0.8471
AT1G73450 Protein kinase superfamily pro... Lus10042297
[exp]
7.9 0.8864
AT1G18040 CDKD1;3, AT;CDC... cyclin-dependent kinase D1;3 (... Lus10017371
[exp]
8.0 0.8347
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Lus10002178
[exp]
8.1 0.8462
AT5G43310 COP1-interacting protein-relat... Lus10021172
[exp]
9.3 0.8884
AT3G19180 ATCDP1, ARC6H, ... A. THALIANA CHLOROPLAST DIVISI... Lus10042298
[exp]
9.4 0.8736
AT3G09180 unknown protein Lus10016953
[exp]
11.0 0.8208
AT1G15750 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOP... Lus10011481
[exp]
12.0 0.8779

Lus10043109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.