Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26980 324 / 4e-110 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032638 [exp] 525 / 0 AT4G26980 380 / 9e-131 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G090700 [exp] 372 / 4e-129 AT4G26980 370 / 7e-128 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043110 pacid=23168411 polypeptide=Lus10043110 locus=Lus10043110.g ID=Lus10043110.BGIv1.0 annot-version=v1.0 ATGGAAATAGGAAAACCTGCAGAGGATACCTTAGCAGCGTCGTTGAAGAAACTTGATTTGGATTCCGTCGCTTCTAATTCAACTTCTTCTCCTTCCATTT CATCCCTTAAACCCTCCCGATTTCGCAGGGAGAAGAAGGGAAAGCCTCCGAGTTTGGTGAGCTTGTGCATCGGACTACTAGGCGCGCATTTGGAGGATAT TGTTGGACAGCTAGGAGAGATTTCTATCGGCTTCCCCGCTCACATTAAGCTTGTGGTTGCAGCAATTGCCCGAAGGCGGAGATTTCTGAACGATGATGTG ATCGTCTCATTAGCAGATAGTTCCTGGGAAGTTGTGGATATCTCCGGTTCAGATGTCACTGATTCAGGCTTGGCTGCTGTATCTCAAATATGCAGCCAGC TTCGGGCCATTGATATAAGAGGATGCCCAAGGAGCAATCACACTGCACGTGGTTGCTTGGGCTTGTTCAAGCCTAAGCTGATGGATCTAAATGAAGATTC TTGGGAGGAACTTGATGCGACAGAGATTGGTCATGGTGCTGAATCCCTTCGGTGGCTTGTTTGGCCGAATATCGATAAAGACTCGCTAGAAATCTTAGCC ACCGAGTGTCCACGCATCATAGTCAACCCCAAGCCATCACCATTCGGTTTTCGTGGAATTGAAGTACCAATCGAAGCGCATGCAGAAATTTCACTGGACA GCCCGTTTGTGAAGGACATTAATCCAACAACCTGGGCCTTGGGTGGAATTGTACCCAGACCTGTGCCTCCGATAGATTCGGACAGCATCAACGAGCTGCC CAGAGCAGAAAGGTTCAGGCTGGCATTCGTCGAGAGAGACACAAGGTTGGCCCCCAAGCGAGCCAAGAACGCGAGGCAGCATCAAAGACGTGCTGAGGGG GAGATGTTGATGAGTAGCACTGACGCCAAGGCAATAGCTCTTGCCTCTCGCGCTAGCAAATTGTTCCATGGTAAGAGCTAA
AA sequence Show only first row Show all	>Lus10043110 pacid=23168411 polypeptide=Lus10043110 locus=Lus10043110.g ID=Lus10043110.BGIv1.0 annot-version=v1.0 MEIGKPAEDTLAASLKKLDLDSVASNSTSSPSISSLKPSRFRREKKGKPPSLVSLCIGLLGAHLEDIVGQLGEISIGFPAHIKLVVAAIARRRRFLNDDV IVSLADSSWEVVDISGSDVTDSGLAAVSQICSQLRAIDIRGCPRSNHTARGCLGLFKPKLMDLNEDSWEELDATEIGHGAESLRWLVWPNIDKDSLEILA TECPRIIVNPKPSPFGFRGIEVPIEAHAEISLDSPFVKDINPTTWALGGIVPRPVPPIDSDSINELPRAERFRLAFVERDTRLAPKRAKNARQHQRRAEG EMLMSSTDAKAIALASRASKLFHGKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26980			RNI-like superfamily protein (...		Lus10043110 [exp]	0	1
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	15.4	0.7332
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	16.9	0.7199
AT4G00590			N-terminal nucleophile aminohy...		Lus10040935 [exp]	37.1	0.6859
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	40.2	0.6822
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10028038 [exp]	106.7	0.6245
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10040224 [exp]	125.1	0.6205
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	137.8	0.6406
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	145.8	0.6445
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	148.1	0.6368
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	187.8	0.6172

Compare expression of checked genes

Lus10043110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.