Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50660 604 / 0 unknown protein AT3G20350 511 / 6e-174 unknown protein AT3G11590 157 / 1e-40 unknown protein AT1G11690 107 / 4e-26 unknown protein AT5G41620 93 / 1e-19 unknown protein AT5G22310 92 / 2e-19 unknown protein AT1G64180 81 / 8e-16 intracellular protein transport protein USO1-related (.1) AT2G46250 71 / 1e-12 myosin heavy chain-related (.1) AT1G64690 52 / 7e-07 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032637 [exp] 1145 / 0 AT1G50660 625 / 0.0 unknown protein Lus10040076 [exp] 693 / 0 AT1G50660 756 / 0.0 unknown protein Lus10021521 [exp] 679 / 0 AT1G50660 750 / 0.0 unknown protein Lus10021324 [exp] 158 / 3e-40 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 157 / 3e-40 AT3G11590 587 / 0.0 unknown protein Lus10002069 [exp] 130 / 3e-32 AT1G50660 147 / 6e-38 unknown protein Lus10013312 [exp] 130 / 6e-32 AT3G11590 285 / 1e-88 unknown protein Lus10013311 [exp] 130 / 2e-31 AT3G11590 332 / 1e-105 unknown protein Lus10005200 [exp] 127 / 2e-30 AT3G11590 322 / 1e-101 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G090100 [exp] 629 / 0 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 343 / 2e-109 AT1G50660 390 / 1e-126 unknown protein Potri.011G003200 [exp] 317 / 5e-99 AT1G50660 350 / 1e-110 unknown protein Potri.016G074300 [exp] 172 / 1e-45 AT3G11590 560 / 0.0 unknown protein Potri.004G199500 [exp] 170 / 8e-45 AT3G11590 399 / 6e-131 unknown protein Potri.006G207800 [exp] 159 / 3e-41 AT3G11590 582 / 0.0 unknown protein Potri.009G160900 [exp] 153 / 3e-39 AT3G11590 399 / 9e-132 unknown protein Potri.003G135000 [exp] 131 / 1e-31 AT5G41620 494 / 1e-167 unknown protein Potri.001G096200 [exp] 128 / 5e-31 AT5G41620 523 / 6e-180 unknown protein Potri.014G093400 [exp] 110 / 4e-25 AT5G41620 347 / 8e-111 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043111 pacid=23168432 polypeptide=Lus10043111 locus=Lus10043111.g ID=Lus10043111.BGIv1.0 annot-version=v1.0 ATGAAGGTCCCCGCCGGGGAACAGCATTCATCCGCGGCAGGAGCTGGGGGAACTTCTATTCTTACTTCAAAGGAGTTCAATCAGAACCCACATCAGCAAA ATCCCGATTCAGATCTCGCCTGGCCACCACGGCGCAGGACCCGGTCTAAGCGGGTCGGACCTTCGGTAGGGCGTCGTAGCCGACCCGATACGCCTCTGCT GAAATGGAAAGTTGAGGGAAATGGCGGAGCGGAGGAGGTCGACGAGGATACTGTGGTGGTGGATGCGGCGGAGTGGAGGTTCAGGTCGCCGGTAGGCAGT GCTGCTGGCGGCGGCGGCGGAGGAGTGGAGCGGAGGAGCCAGAAGGATGGCTTGGGATTTCAGCCTGGTGCTGCTCATGTTGGCGTCTCGTTTCTGCACC ATGAAACTGAGGAAGTCTATGGTTCTGAGTTTAACGAACCATTTCACATCTCAACTTCTGCCTCTGCTACCAAGAACAACAAGTTGTTGTGTAAGCAAAA ACCATCGTTCCAGTTTTCCAACTCTGCAATGGAAGGTTCAACCAAGTGGGATCCTATCGGCATTTCGAACGAGGCAACACACCAAATCCACAGCCACATG AAACGTCTCGATCAACAAGTTAGTACCGTATCAGTGGTTACCGCCCTCGAAGCTGAGCTCAACAAGGCACGACTACGCATCCACGAGCTCGAAACTGAGC GACAATCGTCAAAGAAGAAACTCGAGCACTTCTTAAAGAAAGTCAGCGAGGAAAGAACTGCATGGAAGAGCAGAGAGCATGAGAAAATACGTGCATTCGT CAATGACATCAAGGCTGACTTGAGCCACGAAAGAAAAAGCCGTCAAAGATTGGAGAGTTTGAACTCGAAACTGGTGAATGAACTATCTGATACAAAAGTA TCGACCAAGAGATTGATGCAGGACTATGGAAAAGAAAGAAAGGCTCGAGAACTAATAGAGGAAGTCTGTGACGAGCTTGCACGAGAAATTGGGGACGACA AAGCTGAAATCGAAGCGATAACTAGGGAGAGTTTGAAAATGAGGGAAGAAGTAGACGACGAGAGGAAGATGTTGCAGATGGCAGAGGTGTGGCGCGAAGA ACGTGTCCAAATGAAGCTGGTTGATGCCAAGGTGGCACTTGAGGAGAAGTATTCTCAAATGAACATGCTTCTAGGAAACTTGGCCGACTTTTTAAAGTCC AAAGGTAAAGTTTCCGACATTAAACAAGCTGAGTCACTTATGCAGGCTGCAGCATCCATTGATATGGAAGAGGTAAAGGAATTCACATACGAGCCCCCGA ACCAAGATGATATATTTGCTGTTCTGGAAGAGGTTCATTCTGGTTTGCCAAATGAGAGGGACATTGACCAATGTCATGATAATACCTTCAGCCCTGCAAG TCATGGCTCGAATATGCATACAGCGAGCCCTGAGGCCAATTTCGAAGATGAAAGTGGTTGGGAGACTGTAAGCCATCTCGACGATCAAGGCTCGAGCTTT TCACCAGAAGGAAGCGCTCCATCCGTCAATAAAGAACATTATCGGTACAGCAATGTGTTAGGGAGTGGTGGAGAATGGGAAGACATCATTTGCAAGGAGA CCCCCATTAGTGAAGTCTGTGGTTCTACACGTAGTAGGCAGCAGGGTAAGAAAGTATCAGCTATTGCAAGGCTATGGAAGTATGGAAGTAATGGCGGAGA CAGCTGCGAAACAATATCAGGCGATGGAATGAATGGTAGGTTGTGCAGTGGAAGGAAATCTAGTGCAGGCATTGTTTCGTCAGATAAAGAGTGCAGCCCT TCTGGTCAGTGGAGTTCAGCGGAGTCAGGGATCTCCCAGTTAAGTAGAGGAATGAAAGGATGCATGGAATGGCCGAAAGGGGCAGAGAAGCACATTCCAA AGTCTAGGCTAATGGAGTCCCAGAAACTTCAACTCAGACATGTACTGAAGCAGAAGATTTAG
AA sequence Show only first row Show all	>Lus10043111 pacid=23168432 polypeptide=Lus10043111 locus=Lus10043111.g ID=Lus10043111.BGIv1.0 annot-version=v1.0 MKVPAGEQHSSAAGAGGTSILTSKEFNQNPHQQNPDSDLAWPPRRRTRSKRVGPSVGRRSRPDTPLLKWKVEGNGGAEEVDEDTVVVDAAEWRFRSPVGS AAGGGGGGVERRSQKDGLGFQPGAAHVGVSFLHHETEEVYGSEFNEPFHISTSASATKNNKLLCKQKPSFQFSNSAMEGSTKWDPIGISNEATHQIHSHM KRLDQQVSTVSVVTALEAELNKARLRIHELETERQSSKKKLEHFLKKVSEERTAWKSREHEKIRAFVNDIKADLSHERKSRQRLESLNSKLVNELSDTKV STKRLMQDYGKERKARELIEEVCDELAREIGDDKAEIEAITRESLKMREEVDDERKMLQMAEVWREERVQMKLVDAKVALEEKYSQMNMLLGNLADFLKS KGKVSDIKQAESLMQAAASIDMEEVKEFTYEPPNQDDIFAVLEEVHSGLPNERDIDQCHDNTFSPASHGSNMHTASPEANFEDESGWETVSHLDDQGSSF SPEGSAPSVNKEHYRYSNVLGSGGEWEDIICKETPISEVCGSTRSRQQGKKVSAIARLWKYGSNGGDSCETISGDGMNGRLCSGRKSSAGIVSSDKECSP SGQWSSAESGISQLSRGMKGCMEWPKGAEKHIPKSRLMESQKLQLRHVLKQKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50660			unknown protein		Lus10043111 [exp]	0	1
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	1.4	0.9170
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	2.4	0.9158
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	2.6	0.8555
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	3.5	0.8562
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	3.5	0.8857
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10031078 [exp]	3.9	0.8880
AT4G37810			unknown protein		Lus10011570 [exp]	4.7	0.8437
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	6.7	0.8216
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	9.9	0.8460
AT5G03500			Mediator complex, subunit Med7...		Lus10016217 [exp]	10.7	0.7896

Compare expression of checked genes

Lus10043111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.