Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 613 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 590 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 558 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 140 / 1e-37 Eukaryotic aspartyl protease family protein (.1) AT1G69100 128 / 5e-33 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032636 [exp] 734 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10022957 [exp] 701 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 698 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 600 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 587 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 508 / 5e-179 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 430 / 2e-148 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356900 [exp] 654 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 613 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 595 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 530 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 526 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 477 / 7e-166 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 426 / 2e-146 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0129 [flax] [poplar] PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 CL0129 [flax] [poplar] PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Lus10043112 pacid=23167946 polypeptide=Lus10043112 locus=Lus10043112.g ID=Lus10043112.BGIv1.0 annot-version=v1.0 ATGGGGACGTTTCCCAGCCCTAGGAATTTCATAGCTGCATTTTTGCTTTGCCTTCTGCTGCCCCTGGTTTTTGCTGCACCCAACGATGGGCTTGTCAGAA TCGGAATCAAGAAGAGAAAGCTTGCTTGCTATTTCCACTCCAAGTACAAGTCAAGTCGTTCCAGTACTTACAAGAAGAATGGTAAATCTGCTGCTATACA GTATGGAACTGGAGCTATTTCTGGCTTCTTCAGCGAGGATAGTGTAAAAGTTGGTGATATTGTTGTCAAGAGCCAGGAATTTATTGAAGCAACAAAGGAG CCAAGCATCACATTCTTGGTGGCTAAGTTTGATGGAATACTTGGGCTTGGGTTTCAGGAAATTTCTGTGGGAAATGCTGTCCCTGTGTGGTACAACATGG TCGACCAAGGACTCATCAAGGAGCCTGTTTTCTCCTTCTGGTTTAACCGCAATGCTGACGAGGAACAAGGGGGTGAACTTGTCTTTGGTGGTGTGGATCC TAATCACTTTGTTGGTGAGCACACATATGTGCCTGTGACACAGAAAGGGTACTGGCAGTTTGATATGGGCGATGTTCTGGTTGATGGAAAATCTACTGGA TTCTGCTCTGGTGGTTGTGCAGCGATTGCCGATTCTGGAACCTCATTGTTGGCAGGACCAACGGCAATTATTGCAGAAGTTAACCATGCCATTGGTGCTA CTGGGGTAGCCAGCCAAGAATGTAAGGCCGTAGTTGCTCAATATGGAGAAACTATAATTAAGATGATTTTAGCAAAGGACGAACCGAAAAAGATCTGCTC TCAGATTGGTTTGTGTGAATTTGATGGGACGCAAGGTGTTAGTATGGGTATTGAGAGTGTTGTGAGGAACATTGAGAAAGCAGTTGGCACGTCTAGTGAG GCAACATGCGCTGCTTGTGAGATGGCCGTTGTCTGGATGCAGAACAAGCTTAAGCAGAATGAAACTCAGCAGCACGTAATTGACTATGCAAATGAGCTGT GTGATCGGTTGCCTAGTCCAATGGGAGAATCGTCGGTCGATTGTGGCAGCATGTCAACCATGCCTAATGTTTCATTTACAATTGGCGGGAAGGTCTTTGA CCTTGCTCCCGAACAGTATGTACTCAAAGTTGGAGAGGGGTCTGCTGCTCAATGCATTAGTGGGTTTACGGCAATCGATGTGCCGCCGCCACGTGGTCCA CTCTGGATTCTGGGTGATGTGTTCATGGGCCGCTATCACACGGTGTTTGACTATGGAAACCTCAGGATCGGATTCGCAGAAGCAGCCTAG
AA sequence Show only first row Show all	>Lus10043112 pacid=23167946 polypeptide=Lus10043112 locus=Lus10043112.g ID=Lus10043112.BGIv1.0 annot-version=v1.0 MGTFPSPRNFIAAFLLCLLLPLVFAAPNDGLVRIGIKKRKLACYFHSKYKSSRSSTYKKNGKSAAIQYGTGAISGFFSEDSVKVGDIVVKSQEFIEATKE PSITFLVAKFDGILGLGFQEISVGNAVPVWYNMVDQGLIKEPVFSFWFNRNADEEQGGELVFGGVDPNHFVGEHTYVPVTQKGYWQFDMGDVLVDGKSTG FCSGGCAAIADSGTSLLAGPTAIIAEVNHAIGATGVASQECKAVVAQYGETIIKMILAKDEPKKICSQIGLCEFDGTQGVSMGIESVVRNIEKAVGTSSE ATCAACEMAVVWMQNKLKQNETQQHVIDYANELCDRLPSPMGESSVDCGSMSTMPNVSFTIGGKVFDLAPEQYVLKVGEGSAAQCISGFTAIDVPPPRGP LWILGDVFMGRYHTVFDYGNLRIGFAEAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	0	1
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	1.0	0.9324
AT2G17990			unknown protein		Lus10041920 [exp]	2.4	0.9288
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10042430 [exp]	2.4	0.9318
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	2.6	0.9123
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	4.0	0.9280
AT5G25265			unknown protein		Lus10005347 [exp]	4.5	0.9064
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	6.3	0.9105
AT2G25280			unknown protein		Lus10001950 [exp]	6.7	0.9068
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	7.1	0.9151
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	7.7	0.8977

Compare expression of checked genes

Lus10043112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.