Plant FIBer expression Database

Lus10043113 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26900 934 / 0 HISN4, HISHF, AT-HF HIS HF (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032635
[exp]
1147 / 0 AT4G26900 941 / 0.0 HIS HF (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G267400
[exp]
981 / 0 AT4G26900 931 / 0.0 HIS HF (.1)
Potri.009G061700
[exp]
977 / 0 AT4G26900 958 / 0.0 HIS HF (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00977 His_biosynth Histidine biosynthesis protein
CL0014 Glutaminase_I PF00117 GATase Glutamine amidotransferase class-I
Representative CDS sequence
>Lus10043113 pacid=23167977 polypeptide=Lus10043113 locus=Lus10043113.g ID=Lus10043113.BGIv1.0 annot-version=v1.0
ATGGCGGCGCCGTCGCCATTCTCTTGGTCTACCACTACTCCTTCTTCTTCTTCCTCAAGACTGACCAATATGTCGTATTTATCATCTTCATCCTTCCTTC
TTTCTCTTTCCAAGGATTTCCGCAAAACTCAGCTGCAGGCACACTTCAAATCCTCCCCAAGAAGAAATCTCACTGTTCGTGCCTCTTCCAGCGATTCCGT
TGTCACTCTGCTGGATTACGGAGCTGGAAATGTCCGTAGTGTCAGAAACGCCATTCGCCATCTGGGCTTCCAGATTAAAGACGTGCAAACTCCAGCAGAC
ATTCTGAATGCAAGCCGCCTTATTTTCCCAGGTGTTGGGGCATTTGCACCAGCCATGGATGTGCTTAATAACACTGGAATGGCTGAAGCTCTATGTACAT
ACATTGAGAAGGACCGCCCATTTCTGGGAATTTGTCTTGGACTTCAACTTCTTTTTGAGTCCAGCACTGAGAATGGTCCAGCTTTTAACATTTATTGGCT
GCTTGAATACTTGAGCTCAGTAACTGGTCTTGGCTTAATCCCTGGTGTGGTTGGGAAATTCGATTCATCAAATGGCTTCAGAGTGCCTCACATTGGTTGG
GATGCTTTGCAAATTGCTAAAGATTCCGAGATTTTGGATGAAATTGGCAACCGCCATGTATACTTTGTCCACTCTTACCGTGCGATGCCATCAGAGGAAA
ATAAAGAATGGATTTCCTCTACTTGTGATTATGGCGACACATTTATAGCATCCATCAGAAAGGGAAATGTCCATGCTGTTCAGTTCCATCCAGAGAAGAG
TGGAGATGTTGGCCTTTCAGTACTTAGAAGGTTCTTACTTCCAAAATCACTTCCACCACAGAAGCTAAATCAAGGGAAGGCTTCGAAACTAGCAAAAAGG
GTAATTGCTTGTCTTGACGTGAGGGCAAATGACAAAGGAGACCTCGTCGTAACCAAAGGAGACCAGTACGATGTCAGGGAGCAGACAGAAGAGAACGAGG
TGAGAAACCTGGGGAAGCCAGTGGAGCTTGCTGGGCAGTACTACCTAGACGGTGCAGATGAGGTTACTTTCTTAAACATCACTGGCTTCCGCGATTTCCC
CTTGGGCGATTTGCCAATGCTGCAGGTCTTGAGGTACACGTCTGAAAATGTCTTTGTACCCTTGACTGTCGGAGGCGGCATTAGAGATTTCACAGATTCT
AATGGCAGGCACTACTCCAGTTTGGAAGGAGCTTCAGGATATTTCAGGTCTGGAGCTGATAAGATTTCGATTGGAAGGGATGCTGTTTATGCTGCAGAGG
AATATTTAAGAACTAAAGTCAAGACTGGAAATAGTAGTATTGAACAGATATCTAAAGTTTATGGAAATCAGGCTGTGGTTGTAAGCATTGATCCTCGTAG
AGTGTACCTTAATAGTCCTAACGATGTCGAGTTCAAGGCTGTAAAGTTAACAACCCCAGGTCCAAACGGAGAAGAATTCGCGTGGTACCAATGCACGGTT
AGCGGTGGTAGAGAAGGTCGTCCGATCGGAGCATATGAACTTGCACAGGCAGTTGAAGAACTGGGAGCTGGGGAGATACTGTTGAATTGCATTGACTGCG
ATGGACAAGGAAAAGGGTTTGACATAGATTTGATAGAGTTGATATCTGATGCTGTGAGCATCCCGGTGATTGCGAGTAGTGGTGCAGGCAATACGGAGCA
CTTCACGGAGGTGTTCGAGAAAACCAATGCATCTGCAGCCTTGGCGGCTGGCATTTTCCACAGGAAAGAGGTGCCGATTGGGTCAGTTAAAGAACACTTA
TTGAAGGAAGGGATTGAAGTTAGGATGTGA
AA sequence
>Lus10043113 pacid=23167977 polypeptide=Lus10043113 locus=Lus10043113.g ID=Lus10043113.BGIv1.0 annot-version=v1.0
MAAPSPFSWSTTTPSSSSSRLTNMSYLSSSSFLLSLSKDFRKTQLQAHFKSSPRRNLTVRASSSDSVVTLLDYGAGNVRSVRNAIRHLGFQIKDVQTPAD
ILNASRLIFPGVGAFAPAMDVLNNTGMAEALCTYIEKDRPFLGICLGLQLLFESSTENGPAFNIYWLLEYLSSVTGLGLIPGVVGKFDSSNGFRVPHIGW
DALQIAKDSEILDEIGNRHVYFVHSYRAMPSEENKEWISSTCDYGDTFIASIRKGNVHAVQFHPEKSGDVGLSVLRRFLLPKSLPPQKLNQGKASKLAKR
VIACLDVRANDKGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYLDGADEVTFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDS
NGRHYSSLEGASGYFRSGADKISIGRDAVYAAEEYLRTKVKTGNSSIEQISKVYGNQAVVVSIDPRRVYLNSPNDVEFKAVKLTTPGPNGEEFAWYQCTV
SGGREGRPIGAYELAQAVEELGAGEILLNCIDCDGQGKGFDIDLIELISDAVSIPVIASSGAGNTEHFTEVFEKTNASAALAAGIFHRKEVPIGSVKEHL
LKEGIEVRM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Lus10043113
[exp]
0 1
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Lus10003371
[exp]
2.8 0.9599
AT2G30970 ASP1 aspartate aminotransferase 1 (... Lus10020720
[exp]
2.8 0.9569
AT3G63010 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/... Lus10008188
[exp]
3.2 0.9598
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Lus10035255
[exp]
4.0 0.9552
AT4G26910 Dihydrolipoamide succinyltrans... Lus10032633
[exp]
4.2 0.9550
AT5G01230 S-adenosyl-L-methionine-depend... Lus10017186
[exp]
4.4 0.9447
AT5G13930 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE ... Lus10031622
[exp]
4.5 0.9565
AT3G10120 unknown protein Lus10039676
[exp]
5.3 0.9400
AT2G30970 ASP1 aspartate aminotransferase 1 (... Lus10029796
[exp]
5.5 0.9556
AT4G31420 C2H2ZnF Zinc finger protein 622 (.1.2) Lus10020150
[exp]
5.9 0.9380

Lus10043113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.