Plant FIBer expression Database

Lus10043114 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032634
[exp]
324 / 5e-114 AT5G27650 45 / 2e-05 Tudor/PWWP/MBT superfamily protein (.1)
Lus10026725
[exp]
42 / 0.0002 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G156500
[exp]
74 / 2e-15 ND /
Potri.002G232800
[exp]
40 / 0.001 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0049 Tudor PF00855 PWWP PWWP domain
Representative CDS sequence
>Lus10043114 pacid=23168124 polypeptide=Lus10043114 locus=Lus10043114.g ID=Lus10043114.BGIv1.0 annot-version=v1.0
ATGAAGGGTAAACAACCCGAGAGTAGCAGAAGGGACGATGGAAATGGACGCAGGGAAAGGGTTGTTGCAGAGCACTCGGAAGGAAAGCCTGAGCCTGGAG
ATGTGATTTGGACCAAACTCTCTGGTCGTTTATGGTGGCCTGCACTGGTTGTAGAAGAAGATAATGCCAGAACGGGAAATAAACGTCGAAGACGATCAGA
CAGTGATGTTCTTGTTAGATTGTATGGAAGCTCTAAACAGCTGTATGTTGATCCTGTGAAATGCCGATCCCAGTTTGAGACAATACTCGGACAAAACAAC
GGTTCTTGTCATGAGATTCTCTGGAAGTCTGTCCTGAAGGAGCTTCCTCATCTAGAGCCTGATAGTTTGGAAGGATGCAGAGGGAAAGCTGATTCCACCA
AACGTAAGAAGTCAAACCGTGATAAAGCCGACAAGAAAACAACTACCTCAATTGATGAAGTGACGGCTTCAACGAAACAAAAGAACACACCACAAAAGAA
GAAAGTGAAGGCTGATGATCGAAGTGACGAAGACAGAAGGGCAGTGCAACAAGATAAGGGTGGAGAGCTGACTCCGCGGAGAGTAAAAGTGATGCAAACT
CTTGGTCTGGTTCCTCCTTCTGGGTCTCCATTCTGA
AA sequence
>Lus10043114 pacid=23168124 polypeptide=Lus10043114 locus=Lus10043114.g ID=Lus10043114.BGIv1.0 annot-version=v1.0
MKGKQPESSRRDDGNGRRERVVAEHSEGKPEPGDVIWTKLSGRLWWPALVVEEDNARTGNKRRRRSDSDVLVRLYGSSKQLYVDPVKCRSQFETILGQNN
GSCHEILWKSVLKELPHLEPDSLEGCRGKADSTKRKKSNRDKADKKTTTSIDEVTASTKQKNTPQKKKVKADDRSDEDRRAVQQDKGGELTPRRVKVMQT
LGLVPPSGSPF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G27650 Tudor/PWWP/MBT superfamily pro... Lus10043114
[exp]
0 1
AT2G47640 Small nuclear ribonucleoprotei... Lus10007876
[exp]
1.4 0.8757
AT1G05205 unknown protein Lus10027173
[exp]
4.6 0.8744
AT3G20260 Protein of unknown function (D... Lus10034809
[exp]
5.7 0.8804
AT1G20580 Small nuclear ribonucleoprotei... Lus10013227
[exp]
7.5 0.8575
AT2G46410 MYB CPC CAPRICE, Homeodomain-like supe... Lus10014933
[exp]
8.4 0.7754
AT3G07590 Small nuclear ribonucleoprotei... Lus10016068
[exp]
8.5 0.8503
AT3G44750 HDT1, HDA3, ATH... HISTONE DEACETYLASE 2A, histon... Lus10003376
[exp]
9.9 0.8428
AT1G32730 unknown protein Lus10001085
[exp]
11.2 0.8178
AT5G02530 RNA-binding (RRM/RBD/RNP motif... Lus10040851
[exp]
11.5 0.8399
AT4G30220 RUXF small nuclear ribonucleoprotei... Lus10037606
[exp]
11.5 0.8508

Lus10043114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.