Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26910 572 / 0 Dihydrolipoamide succinyltransferase (.1.2.3) AT5G55070 564 / 0 Dihydrolipoamide succinyltransferase (.1) AT3G52200 117 / 8e-28 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 112 / 2e-26 Dihydrolipoamide acetyltransferase, long form protein (.1) AT1G54220 110 / 8e-26 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G06850 91 / 1e-19 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT3G25860 79 / 1e-15 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G34430 70 / 1e-12 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043117 [exp] 763 / 0 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10032632 [exp] 638 / 0 AT4G26910 560 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10032633 [exp] 211 / 1e-65 AT4G26910 229 / 2e-74 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10001967 [exp] 132 / 7e-33 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 131 / 1e-32 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10006877 [exp] 116 / 4e-28 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 114 / 7e-27 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037492 [exp] 93 / 5e-20 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10006498 [exp] 90 / 8e-19 AT3G06850 558 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357000 [exp] 635 / 0 AT4G26910 624 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.011G089200 [exp] 626 / 0 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1) Potri.014G154700 [exp] 563 / 0 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.001G198000 [exp] 137 / 6e-35 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 124 / 3e-30 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.003G043900 [exp] 114 / 5e-27 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.010G011300 [exp] 88 / 2e-18 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.008G219700 [exp] 80 / 9e-16 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.013G114300 [exp] 78 / 3e-15 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 72 / 2e-13 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Representative CDS sequence Show only first row Show all	>Lus10043116 pacid=23168265 polypeptide=Lus10043116 locus=Lus10043116.g ID=Lus10043116.BGIv1.0 annot-version=v1.0 ATGTTCGGCGTTCTCAGGAGGAGAATTGCTACCGGCAGTTCCTCTTCTTCTTCGATATTGAAGCAGTCTCTGCAGAATCTTCGACCTGCAGCGTCCACGC CTGGAGCTGCCTATGCTGCAGAAACTGAGGAAATGATACTGCCTCTGTTTAATTCAAAGTGGTTCAGGACTAGGAGATTTATATGGTGGGCTAATAGTAA CATGGGTGTTAACTTAATCACTGAACTGATGACCTCTAGGCAAACTTGGACCAGGGGATTTTCTTCTGATAGTGAGGATTTGGCTCATGCTGTTGTACCT TTCATGGGTGAATCCATTACTGACGGCACACTAGCTACATTCTTAAAGAAACCTGGTGACAGGGTTGAAGTTGATGAGCCTATTGCACAAATTGAGACAG ATAAGGTGACAATTGATGTTGCTAGTCCAGAAGCGGGTGTGATAAAAGAGTTTGTAGCCAAAGAAGGAGACACTGTTGAGCCAGGAACAATGGTTGCTAT CATTTCAAAGTCTGGTGAAGGGGTATCTCATGTTGCTCCATCTGAAAAATTACCAGAGACTGCTGCACCTAAGCCATCTGAAAAGAAAGATGAGGTAAAA CAAACTTCTAAATCCGAGTCTTCTCCTAGTACAGAGAAATTCAAGAAATCAACATCAGCTGCATCACCTCCGAGACAAGCTGCCACAGAGCCTCAGCTTC CTCCCAAGGATAGAGAAAGACGAGTTCCTATGACCAGACTTCGTAAAAGAGTTGCTACTCGGCTGAAGGACTCACAGAACACATTTGCCCTGCTAACAAC ATTCAATGAAGTTGACATGACCAATTTGATGAAGCTTCGTTCCGAATACAAGGATGCTTTTGTTGAAAAGCATGGTGTGAAGTTGGGACTTATGTCTGGT TTTATCAAGGCAGCTGTCTCTGCGCTCCAGCAGCAGCCTGTTATAAATGCCGTGATCGACGGGGATGATATTATATATAGGGATTATATAGACATTAGTA TAGCAGTTGGAACTCCAAAGGGACTTGTTGTGCCTGTAATTCGCAATGCTGAGAAGATGAATTTTGCTGATATTGAGAAGGAGATCAACACCCTTGCTAA GAAGGCTAATGATGGGACTATTTCAATAGATGAGATGGCAGGAGGTTCATTTACGATATCGAACGGTGGTGTCTATGGAAGCCTTTTGAGTACTCCGATC ATCAACCCTCCCCAGTCTGCAATATTGGGAATGCACTCAATAGTGAGCCGGCCAATGGTAGTTGGAGGGAGCGTGGTGCCAAGGCCAATGATGTACATTG CTCTGACCTATGACCATAGGCTGATTGATGGGAGAGAGGCTGTATTCTTCCTGCGTCGAATCAAGGATGTCGTCGAGGATCCTCGCAGATTGCTTCTTGA TGTCTGA
AA sequence Show only first row Show all	>Lus10043116 pacid=23168265 polypeptide=Lus10043116 locus=Lus10043116.g ID=Lus10043116.BGIv1.0 annot-version=v1.0 MFGVLRRRIATGSSSSSSILKQSLQNLRPAASTPGAAYAAETEEMILPLFNSKWFRTRRFIWWANSNMGVNLITELMTSRQTWTRGFSSDSEDLAHAVVP FMGESITDGTLATFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGVIKEFVAKEGDTVEPGTMVAIISKSGEGVSHVAPSEKLPETAAPKPSEKKDEVK QTSKSESSPSTEKFKKSTSAASPPRQAATEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSEYKDAFVEKHGVKLGLMSG FIKAAVSALQQQPVINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNAEKMNFADIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGSLLSTPI INPPQSAILGMHSIVSRPMVVGGSVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043116 [exp]	0	1
AT2G36670			Eukaryotic aspartyl protease f...		Lus10027732 [exp]	15.0	0.8309
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	16.7	0.7684
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10009114 [exp]	20.4	0.7871
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	22.4	0.8244
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10016938 [exp]	35.8	0.8069
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10005151 [exp]	49.8	0.8034
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Lus10042920 [exp]	83.8	0.7850
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	87.6	0.7459
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	138.9	0.7423
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	164.0	0.7275

Compare expression of checked genes

Lus10043116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.