Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26910 590 / 0 Dihydrolipoamide succinyltransferase (.1.2.3) AT5G55070 567 / 0 Dihydrolipoamide succinyltransferase (.1) AT3G52200 116 / 1e-27 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 113 / 1e-26 Dihydrolipoamide acetyltransferase, long form protein (.1) AT1G54220 110 / 7e-26 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G06850 92 / 1e-19 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT3G25860 79 / 1e-15 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G34430 70 / 9e-13 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043116 [exp] 761 / 0 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10032632 [exp] 669 / 0 AT4G26910 560 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10032633 [exp] 211 / 2e-65 AT4G26910 229 / 2e-74 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10006877 [exp] 116 / 4e-28 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 115 / 4e-27 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 114 / 8e-27 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 113 / 2e-26 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037492 [exp] 94 / 4e-20 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10006498 [exp] 90 / 6e-19 AT3G06850 558 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357000 [exp] 656 / 0 AT4G26910 624 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.011G089200 [exp] 648 / 0 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1) Potri.014G154700 [exp] 564 / 0 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.008G027400 [exp] 124 / 4e-30 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.003G043900 [exp] 114 / 4e-27 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.001G198000 [exp] 110 / 1e-25 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.010G011300 [exp] 89 / 1e-18 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.008G219700 [exp] 80 / 7e-16 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.013G114300 [exp] 78 / 3e-15 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 73 / 1e-13 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Representative CDS sequence Show only first row Show all	>Lus10043117 pacid=23168169 polypeptide=Lus10043117 locus=Lus10043117.g ID=Lus10043117.BGIv1.0 annot-version=v1.0 ATGATGTTCGGCGTTCTCAGGAGGAGACTTGCTACCGGCAGTTCCTCTTCTTCTTCGATATTGAAGCAGTCTCTGCAGAATCTTCGACCTGCGGCGTCCA CGCCTGGAGCTGCCTTTGCTGCAGAGACTGAGGTTTTGCTTAATCCAAATCGACTTACACATGTCCGGAACTATAGTCGCCTTGTCTTGCCAGGTTCCAT TGTTAGTTTGACATCCAACAGGGGTGTTAATTTAAGCACTGAACTAATGACCTCTAAGCAAATTTGGACCAGGGGATTTTCTTCTGACAGTGAGGATTTG GCTCATGCTGTTGTACCTTTCATGGGAGAATCCATTACTGACGGCACACTAGCTACATTCTTAAAGAAACCTGGTGACAGGGTTGAAGTTGATGAGCCTA TTGCACAAATTGAGACAGATAAGGTGACAATTGATGTTGCTAGTCCAGAAGCGGGTGTGATAAAAGAGTTTGTAGCCAAAGAAGGAGACACTGTTGAGCC AGGAACAATGGTTGCTATCATTTCAAAGTCTGGTGAAGGGGTATCTCATGTTGCTCCATCTGAAAAATTACCAGAGACTGCTGCACCTAAGCCATCTGAA AAGAAAGATGAGGTAAAACAAACTTCTAAACCCGAGTCTTCTCCTAGTACAGAGAAACCCAAGAAATCAACATCAGCTGCATCACCTCCGAGACAAGCTG CTACAGAGCCTCAGCTTCCTCCCAAGGATAGAGAAAGACGAGTTCCTATGACCAGACTTCGCAAAAGAGTTGCTACACGGTTGAAGGACTCGCAGAACAC ATTTGCCTTGCTGACAACATTTAATGAAGTTGATATGACCAATTTGATGAAGCTTCGTTCCGAATACAAGGATGCTTTTGTTGAAAAGCATGGTGTGAAG TTGGGACTTATGTCTGGTTTTATCAAGGCAGCTGTCTCTGCGCTCCAGCAGCAGCCTGTTATAAATGCCGTGATCGATGGGGATGATATTATATATAGGG ATTACATAGACATTAGTATAGCAGTTGGAACTCCAAAGGGACTTGTTGTGCCTGTAATTCGCAATGCTGAGAAGATGAATTTTGCTGATATTGAGAAGGA GATCAACACCCTTGCTAAGAAGGCTAATGATGGGACTATTTCAATAGATGAGATGGCAGGAGGTTCATTTACGATATCGAACGGTGGTGTCTATGGAAGC CTTTTGAGTACTCCGATCATCAACCCTCCTCAGTCTGCAATATTGGGAATGCACTCAATAGTGAGCCGGCCAATGGTAGTTGGAGGGAGCGTGGTGCCAA GGCCAATGATGTACATTGCTCTGACCTATGACCATAGGCTGATTGATGGGAGAGAGGCTGTATTCTTCCTGCGTCGAATTAAGGATGTCGTCGAGGATCC CCGCAGACTGCTTCTTGATGTCTGA
AA sequence Show only first row Show all	>Lus10043117 pacid=23168169 polypeptide=Lus10043117 locus=Lus10043117.g ID=Lus10043117.BGIv1.0 annot-version=v1.0 MMFGVLRRRLATGSSSSSSILKQSLQNLRPAASTPGAAFAAETEVLLNPNRLTHVRNYSRLVLPGSIVSLTSNRGVNLSTELMTSKQIWTRGFSSDSEDL AHAVVPFMGESITDGTLATFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGVIKEFVAKEGDTVEPGTMVAIISKSGEGVSHVAPSEKLPETAAPKPSE KKDEVKQTSKPESSPSTEKPKKSTSAASPPRQAATEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSEYKDAFVEKHGVK LGLMSGFIKAAVSALQQQPVINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNAEKMNFADIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGS LLSTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	0	1
AT2G33490			hydroxyproline-rich glycoprote...		Lus10001808 [exp]	1.0	0.8148
AT4G35240			Protein of unknown function (D...		Lus10014445 [exp]	2.4	0.7929
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10009114 [exp]	3.7	0.8002
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10004080 [exp]	5.1	0.7368
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	10.2	0.7339
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	13.2	0.7591
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10017619 [exp]	16.0	0.6621
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043116 [exp]	16.7	0.7684
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	21.7	0.7448
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	23.2	0.7534

Compare expression of checked genes

Lus10043117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.